Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0399
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    26   3.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   3.9  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   5.2  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 153 LLTDRDFEPAELRPTITTDKPI--INVELFATNTL 55
           +L+  +F+PA+L P    DKP+  + +E  A +TL
Sbjct: 33  ILSGSEFDPAKLHPLADLDKPLDYLLIEEDALSTL 67


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +3

Query: 114  DAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGYRSPVAPT 278
            D   L   L R +   +E E  ++  +C E  K  L YE    +      P +PT
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYEHAQLKVCTGSLPYSPT 2590


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 316 EAEGSRREET*LGS**DGRHCSEDGQDRXGVPXRSE 423
           EAE   R +  LG    G+HCSE G      P   E
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEE 355


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 281 PEKTPSVEEIQEKLKAAEERRRSLE 355
           PE TP+VE++ E L    E R SL+
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQ 323


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 266 RRADSPEKTPSVEEIQEKLK 325
           RRAD PE+TPS    ++ L+
Sbjct: 21  RRADRPEETPSSSVYEQNLR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,218
Number of Sequences: 5004
Number of extensions: 23082
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)