Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0399
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1547 + 27623945-27625612 34 0.060
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 30 0.98
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 30 0.98
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 2.3
07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378... 29 3.0
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 29 3.0
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 27 6.9
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 27 6.9
02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724 27 9.1
>07_03_1547 + 27623945-27625612
Length = 555
Score = 34.3 bits (75), Expect = 0.060
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 255 SPPARRVSPRTPDRPSTSLGS--GFRWI*FQLPWLPLLTDRDFEPAELRPTITTDKPIIN 82
+PPA++ SP PDRP + S G R I + L D F+ +RP TT+ I
Sbjct: 362 APPAKQASPSPPDRPRLVIVSRTGSRVIENEADVAALAADVGFDVRVVRPERTTELCKIY 421
Query: 81 VELFATNTLTPI 46
EL A++ + +
Sbjct: 422 RELNASDAMVGV 433
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 209 EGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLE 355
E +G R D GG + D P K + E+ QE AEE + L+
Sbjct: 152 EYHNGERSDENNVGGNAGEQEVDQPPKKGTDEDDQEDEDGAEEEKNELD 200
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 203 DVEGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLE 355
D E VRGD +P R+D ++ EE +E+ K RRR E
Sbjct: 1056 DAEAPGIVRGDADDDDAVPPKERSDEQQQQDEEEEEEEEQKWRRRRRREEE 1106
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 257 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 355
P PR ++ KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176
>07_01_0507 +
3777505-3777762,3780286-3780390,3780740-3780796,
3781534-3781863
Length = 249
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 220 WRTR*YSPSRWATGPPSRRLTRKDSFRRRDPREA 321
WR PS TGPP RR D + DP +A
Sbjct: 146 WRN--LDPSWKHTGPPMRRYFHPDGYHSADPHDA 177
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 206 VEGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKA 328
+ G +G RG +R+AGGL + ++ SVEE Q ++ A
Sbjct: 415 LRGSTG-RGKSRKAGGLTKVELTEQDKEYASVEEAQNRVAA 454
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 275 DSPEKTPSVEEIQEKLKAAEERRRSLE 355
+SPE P + E+ + L+ EE RRS+E
Sbjct: 515 NSPELRPKMSEVTQILQENEEDRRSVE 541
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 162 WLPLLTDRDFEPAELRPTITTDKPIINVE 76
WLP+L R F PAE+ K I N+E
Sbjct: 104 WLPILERRSFGPAEITEWEELKKVIDNLE 132
>02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724
Length = 276
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 156 EAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGYR 260
E M+++ +I C +KGGL + +L P GYR
Sbjct: 234 ELMKLKFSMLQIDCTH-TKGGLCVDSVLIYPKGYR 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,406
Number of Sequences: 37544
Number of extensions: 185908
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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