Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0399
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12) 29 3.1
SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 28 4.1
SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1) 27 7.1
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_50420| Best HMM Match : RelA_SpoT (HMM E-Value=0) 27 9.4
SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11) 27 9.4
SB_34278| Best HMM Match : DUF1605 (HMM E-Value=3.6) 27 9.4
SB_3837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 203 DVEGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRR 346
D ++ VR + ++A +P K P + E+QEKLKA +E RR
Sbjct: 260 DKSRQAAVRAEQKKASEKKLP-------KDPKLLELQEKLKAKKEERR 300
>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
Length = 1114
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 43 AYRS*SVCCE*FYIYYRFVCCDRRTQFSWFEV 138
A+ S+ C Y Y F CCD T+ S FE+
Sbjct: 935 AFTPPSLTCHYLYSYRTFQCCDLGTKISPFEM 966
>SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 203 DVEGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKA 328
+V R ++ GG VPRR E SVEE++E L A
Sbjct: 483 EVSSRPALKYSRAFTGGAQVPRRGMLREPEMSVEEVEECLVA 524
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 211 FDISWQRISVDLVSTSMASTFNRQRLRTS 125
+DI WQ ++++ ++ + NR+RL TS
Sbjct: 1447 YDILWQDVNIEKINQELLDFQNRRRLTTS 1475
>SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1)
Length = 268
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 212 GRSGVRGDTRRAGGLPVPRRADSPEKT 292
G +G+RG + P PR ADSP+KT
Sbjct: 37 GSNGIRGVVSSS---PTPRSADSPDKT 60
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 191 PLPRDVEGRSGVRGDTRRAGGLPVPRRADSPEKTPSVE 304
P P V G GV+GDT +G P P P TP +
Sbjct: 848 PGPPGVTGEQGVKGDTGPSGE-PGPAGPPGPLGTPGTQ 884
>SB_50420| Best HMM Match : RelA_SpoT (HMM E-Value=0)
Length = 278
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -3
Query: 317 SLGSLRRKESFRVSRRD---GGPVAHRLGEYHL 228
+LGSLR + R++R P+AHRLG +H+
Sbjct: 3 TLGSLRPDKRRRIARETLEIYSPLAHRLGIHHI 35
>SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 132 EPAELRPTITTDKPIINVELF 70
+PA ++PT+ KP+ ++ELF
Sbjct: 161 DPARIQPTLAMAKPVSSLELF 181
>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
Length = 1500
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Frame = +2
Query: 260 VPRRADSPEKTPSVEEIQ------EK-LKAAEERRRSLE 355
V RRA+SPEKT E+Q EK ++ EE +R LE
Sbjct: 1119 VSRRAESPEKTKEKAELQRLRNEYEKGIRTNEELKRQLE 1157
>SB_34278| Best HMM Match : DUF1605 (HMM E-Value=3.6)
Length = 243
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 271 RRLTRKDSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRXGVPXRSEXTNN 435
R R+D RRR R+++ RR + G R S D ++R G +S + +
Sbjct: 105 RERDRRDRDRRRSDRDSDRDRRRDRDRGR--SSRDASPDREERKGDKDKSRRSRS 157
>SB_3837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 132 EPAELRPTITTDKPIINVELF 70
+PA ++PT+ KP+ ++ELF
Sbjct: 23 DPARIQPTLAMAKPVSSLELF 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,387
Number of Sequences: 59808
Number of extensions: 196390
Number of successful extensions: 986
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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