Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0399
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    32   0.22 
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    31   0.66 
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    27   6.2  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    27   6.2  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    27   8.1  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    27   8.1  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 240 RVSPRTPDRPSTSLGSGFRWI*F-QLPWLPLLTDRDFEPAELRPT 109
           R  P+ P +P T++    R I   + P +P   D+DF P  L+PT
Sbjct: 259 RKKPQQPPKPQTAIDEDLRSISLTKKPPVPSAQDQDFRPKTLKPT 303


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 200  RDVEGRSGVRGDTRRAGGLPVPRRADSPEK 289
            R +E R  +R  TR  GGL +P+  D  E+
Sbjct: 1013 RQIEERKSLRKSTRSVGGLEIPKEEDEDEE 1042


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 282 GESARRGTGSPPARRVSPRTPDRPSTS 202
           G +A  GT +PPA R  P T   P+T+
Sbjct: 299 GSTAAPGTRAPPATRAPPATRAPPATT 325


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 271 RRLTRKDSFRRRDPREAEGSRREE 342
           R + RK    RRDPR  EG+RR +
Sbjct: 149 RLIQRKREDNRRDPRAHEGNRRRD 172


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 289 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRXGVPXRS 420
           D+F+ +  R ++GS      +GS  DG  CS D   +   P  S
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAPS 394


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 289 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRXGVPXRS 420
           D+F+ +  R ++GS      +GS  DG  CS D   +   P  S
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAPS 394


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 212 GRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRR 346
           G S   G + R+G +P+PR    PE+  S+  + +  +  E R++
Sbjct: 10  GSSSQHGQSWRSGDIPLPRDFPPPER-QSIPSLMDPPEIVEWRKK 53


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 209 EGRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 352
           E  S  +    +  G+P+P+     EK    +E +EK+K+ EE  R L
Sbjct: 165 EEESSQKMSKSKEKGVPIPKIDIEIEKASPKKEKKEKVKSPEELTRRL 212


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 212 GRSGVRGDTRRAGGLPVPRRADSPEKTPSVEEIQEKLKAAEERRR 346
           G S   G + R+G +P+PR    PE+  S+  + +  +  E R++
Sbjct: 10  GSSSQHGQSWRSGDIPLPRDFPPPER-QSIPSLMDPPEIVEWRKK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,498
Number of Sequences: 27780
Number of extensions: 141056
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)