Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0399
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    28   3.3  
At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   3.3  
At3g12450.1 68416.m01550 hypothetical protein                          28   4.4  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   5.8  

>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 275 DSPEKTPSVEEIQEKLKAAEERRRSLE 355
           +SP+ T  + +I+E LK A ER  SLE
Sbjct: 92  ESPQTTTRLSQIKEDLKKANERISSLE 118


>At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Citrus
           unshiu][gi:4126403], leucoanthocyanidin dioxygenase
           [Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 371

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 159 LPLLTDRDFEPAELRPTITTDKP 91
           L  L DR  +PA LRPT T D P
Sbjct: 35  LSSLPDRYIKPASLRPTTTEDAP 57


>At3g12450.1 68416.m01550 hypothetical protein
          Length = 171

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 114 DAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGYR 260
           DA +L RS  +L+++ +    K  E      S  G ++EVI+ E +GYR
Sbjct: 78  DARKLERSRHQLEIDDLLDLRKYVEDSSGRRSMRGCSFEVIVEECLGYR 126


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 153 VEAMEVETKSTEIRCQEMSKGGLAYEV 233
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,859,731
Number of Sequences: 28952
Number of extensions: 132450
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)