Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0398
         (378 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   2.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   7.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   9.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    20   9.5  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 95  HCLLIKLKTTRYNTIPLNKHFD 30
           +C++ K   +   T+ LNKH D
Sbjct: 257 YCIIAKNLMSNAATLVLNKHID 278


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 183 STRPSLPPXQTETPYHRGTPA 121
           S  P+ PP  +  P  R TP+
Sbjct: 92  SVSPTTPPTPSPPPEERLTPS 112


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 87  KTMESPVVLDKPPE 128
           K    PVV+ KPP+
Sbjct: 184 KPTNKPVVVTKPPQ 197


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 199 DTPTSRRGCGNDPPP 243
           D+P S++     PPP
Sbjct: 219 DSPNSKKSATPSPPP 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,610
Number of Sequences: 336
Number of extensions: 789
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)