Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0398
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   1.3  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   5.2  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 16  LRIRASKCLFSGIVLYLVVFNL 81
           +  RA KC+ S + LY ++FN+
Sbjct: 458 IEYRALKCVCSMVTLYFIIFNI 479


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 171 SGAWSELAARHPDIAARLRQ 230
           S AW E   +HPD+  R+++
Sbjct: 180 SPAWDERFKKHPDVGDRMKR 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 990,486
Number of Sequences: 5004
Number of extensions: 13646
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)