Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0398
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   1.6  
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020     28   2.8  
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324...    27   4.9  
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728     27   6.5  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 202 TPTSRRGCGNDPPPGPGRPT 261
           TPT+RR  G  PPP PG  T
Sbjct: 43  TPTTRRRRGPPPPPRPGAAT 62


>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
          Length = 241

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 180 WSELAARHPDIAARLRQRPATWARKA 257
           W +     PD+AAR R    +WAR A
Sbjct: 44  WPDPVLPRPDLAARCRATAPSWARSA 69


>10_08_0440 +
           17930970-17931297,17931682-17931905,17932439-17932465,
           17933747-17934340
          Length = 390

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 159 EEEGSGAWSELAARHPDIAARLRQRPATWARK 254
           E EG G       R P+  +R +QR A W  K
Sbjct: 32  EIEGGGGEPSRKKRDPEAVSRFKQRSAAWFAK 63


>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
          Length = 502

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 87  KTMESPVVLDKPPEYHGDRGFP 152
           +T + P +L +PP +HG   +P
Sbjct: 255 QTPQRPPMLSRPPSFHGRHSYP 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,246,402
Number of Sequences: 37544
Number of extensions: 116376
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)