Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0397
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    34   0.017
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.37 
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   3.5  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   4.6  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   6.1  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   8.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   8.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   8.0  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 313 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATXLADP 450
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ T L DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVP 275
           T+   TP+PT     T   +  +VTT LT  P    V   V VP
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 312



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVP 275
           T+   TP+PT     T   +  +VTT LT  P    V   V VP
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 390



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVP 275
           T+   TP+PT     T   +  +VTT LT  P    V   V VP
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 546



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVP 275
           T+   TP+PT     T   +  +VTT LT  P    V   V VP
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 624



 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVP 275
           T+   TP+PT     T   +  +VTT LT  P    V   V +P
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEIP 468



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 144 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELXAVYGRVHVPPARS 287
           T+   TP+PT     T   +S +VTT LT +     V   V VP   S
Sbjct: 659 TVYVETPYPTTVTTTTTVGYSGSVTTTLTGSGSNSIVTETVDVPTTTS 706


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 123 KRIPTIPTMETWTPFPTARAIVTE 194
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 278 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 418
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +2

Query: 332 AARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPPLWYRLP 496
           AA PL  P  +    T   + SN     S PL  P    P K S   PP   RLP
Sbjct: 357 AAEPLATPPRHPLNATNGTSQSN----ISTPLPEPTPGQPRKVSGHNPPSARRLP 407


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 AAFMYRQPEAAQAPSTGQVYIP 324
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 380 KSITLSNQRTRSSAPLKRPNWLTPLKRSNCTP 475
           K I+L  +RT     L+ P  +TPL R+   P
Sbjct: 54  KMISLPKERTSDGVLLQLPETVTPLPRAKPLP 85


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 422 PLKRPNWLTPLKRSNCTPPLWYRLPRLPKAC 514
           PL +  WL+ ++++N  P   +RLP     C
Sbjct: 342 PLNQKYWLSAVQKNNGVPEPEFRLPMAFLGC 372


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 135 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTP 239
           T P +ET  TP   A    TE      V+TI TTTP
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP 250


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 370 QENEVYYPQQPENPIFSPTQATXLADPTE 456
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,716
Number of Sequences: 5004
Number of extensions: 40278
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)