Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0397
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0750 - 6754126-6755248,6755331-6755791 30 1.2
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 30 1.5
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 2.7
02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443 29 2.7
01_06_1341 - 36434098-36436080 29 2.7
11_06_0372 + 22781438-22781977 29 3.5
09_06_0264 - 21929086-21931368 29 3.5
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 3.5
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 28 4.7
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112 28 4.7
06_01_0127 - 977667-978719,978875-979051 28 6.2
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 28 6.2
03_05_0163 - 21424010-21424057,21424310-21424417,21424557-214246... 27 8.2
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 442 PVXSLEWG*RSGSLVAEGNRLRFLVAVR-SW-YRQGSGGDDQVCTPGPLKAP 293
P L W S A G R F+VA R +W +R+G GD C G L P
Sbjct: 212 PREFLRWLTSQPSWAALGGRDHFMVAARTTWMFRRGGAGDSLGCGNGFLSRP 263
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 273 PPARSRTGAFNGPGVHT*SSPPDPCRYQLRTATRKRSLLPSATREPDLQPHS 428
PP R PG+ T P TAT KR+ P++T P PH+
Sbjct: 43 PPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHA 94
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 262 AFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSP 423
+ + R E A P T Y P +Y PQ + E Y P QP+ + P
Sbjct: 209 SLLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPP 261
>02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443
Length = 522
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 71 IMKVMYAFVMMSCA-LLVXAYPYNPYYGNVD--SLSYGSGDSNRGGL 202
+MK M F+ + + L+V AYP+ Y GN D SL Y N G L
Sbjct: 209 VMKPMLDFLAQTGSYLMVNAYPFFAYSGNADVISLDYALFRPNAGVL 255
>01_06_1341 - 36434098-36436080
Length = 660
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 275 ASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLK 430
A P+ R+ R+RC + + P P PA N +++ S + R++A L+
Sbjct: 21 AGPRARPRVSRSRCVASLASQPPTPPPAN-ANHLVQTLCASGRLARAAALLQ 71
>11_06_0372 + 22781438-22781977
Length = 179
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 335 ARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPP 478
++ P PA + KKTK+ T ++ + PL W+ KR T P
Sbjct: 15 SKAAPAPAPAKKKKTKTTTTTS--AMAPLPLAEVKWILAQKREPYTNP 60
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 337 QTLADTSYVPQQENEVYYPQQPENPIFSPTQATXLADPTEKI 462
+TLAD +P+ E E +P++ +SP+Q +PT +
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 260 PRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 436
PR + SP P R R + + RP P P + ++L+ R+R +P P
Sbjct: 11 PRFVSPSPSPAVAATRRRLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSPPPPP 69
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +3
Query: 363 TATRKRSLLPSATREPDLQ--PH 425
T +++ SLLPS REPDL+ PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145
>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
Length = 200
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 358 SWYRQGSGGDDQVCTPGPLKAPVRLRAGG 272
SWY GSG V P APV + AGG
Sbjct: 132 SWYASGSGVGRMVQVPAIDAAPVCIAAGG 160
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 266 SCTASPKPHRRLQRARCTYLIVAARPLPIPAT 361
S T SP +R L R+ +IVA RPLP+P T
Sbjct: 257 SSTMSPTFYRVLLRS----IIVAGRPLPVPPT 284
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 373 LVAVRSWYRQGSGGDDQVCTPGPLKAPVRLRA 278
+V + W+R G G + P P PV++ A
Sbjct: 43 VVILAVWFRSGGGAPPKAAAPPPRPPPVKIEA 74
>03_05_0163 -
21424010-21424057,21424310-21424417,21424557-21424643,
21425245-21425364,21425467-21425565,21426409-21426522,
21427041-21427094,21427202-21427296,21427650-21427785,
21428036-21428292,21428852-21429575
Length = 613
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 329 VAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPPLWYRLPR 499
+AA PLPIP S +S + RP W P +R P +RL R
Sbjct: 40 LAAPPLPIPPASAAAANLSGAVSGV-AQPETMYNRPIWKPPPRRERMPAPRAFRLTR 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,190,775
Number of Sequences: 37544
Number of extensions: 334189
Number of successful extensions: 1047
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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