Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0397
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4) 32 0.39
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 3.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 28 4.8
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 4.8
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22) 27 8.4
>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
Length = 365
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 371 KKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPPL 481
K+T S+ L +++T S +RPNW LK+++ PP+
Sbjct: 298 KRTGSVPLQSRKTSSG---ERPNWSQNLKKASYVPPM 331
>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 30.7 bits (66), Expect = 0.90
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = +1
Query: 277 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATXLADPTE 456
Q E A A S V +P+R QT + S P+Q N+V PQ E P S T A LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679
Query: 457 K 459
+
Sbjct: 680 Q 680
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Frame = +1
Query: 319 IPDRRRQTLADTSYVPQQENEVYYPQQ--PENPIFSPTQATXLADPTEKIELYSTTLVPV 492
IP +R L + +P + P Q P N +PT T P T P
Sbjct: 11 IPHHQRPPLLPSQQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPP 70
Query: 493 AKATEGLP 516
A T P
Sbjct: 71 ATTTPTKP 78
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.7 bits (61), Expect = 3.6
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +2
Query: 260 PRSCTASPKPHRRLQRARCTYLIVAAR---PLPIPATYRNKKTKSITLSNQRTRS---SA 421
PR SP P R +R R +Y R P P P R +K+ S + +R RS S
Sbjct: 884 PRRRRRSPSPPPR-RRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSP 942
Query: 422 PLKRPNWLTPLKRSNC-TPP 478
P R + L P +R TPP
Sbjct: 943 PPMRSSPLPPPQRKRASTPP 962
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 192 EEAWS*AVTTILTTTPELXAVYGRV-HVPPARSRTGAFNG 308
EE W L T PEL A+ G V H P +R F G
Sbjct: 830 EEVWECQFDAQLNTQPELRALVGDVEHGKPLEARDAFFGG 869
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 192 EEAWS*AVTTILTTTPELXAVYGRV-HVPPARSRTGAFNG 308
EE W L T PEL A+ G V H P +R F G
Sbjct: 918 EEVWECQFDAQLNTQPELRALVGDVEHGKPMEARDAFFGG 957
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 283 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATXLADP 450
+ AQAPST Q+ + R++T S Q + P + P + + P Q A P
Sbjct: 181 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 240
Query: 451 TEKIELYSTTLVPVAKA 501
T + + + L P A A
Sbjct: 241 TSRQQETAAPLSPFAAA 257
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 283 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATXLADP 450
+ AQAPST Q+ + R++T S Q + P + P + + P Q A P
Sbjct: 848 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 907
Query: 451 TEKIELYSTTLVPVAKA 501
T + + + L P A A
Sbjct: 908 TSRQQETAAPLSPFAAA 924
>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 192 EEAWS*AVTTILTTTPELXAVYGRV-HVPPARSRTGAFNG 308
EE W L T PEL A+ G V H P +R F G
Sbjct: 537 EEVWEFQFDAQLNTHPELRALVGDVEHRKPLEARDAFFGG 576
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 192 EEAWS*AVTTILTTTPELXAVYGRV-HVPPARSRTGAFNG 308
EE W L T PEL A+ G V H P +R F G
Sbjct: 763 EEVWECQFDAQLNTHPELRALVGDVEHGKPLEARDAFFGG 802
>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 351 IGKGLAATIRYVHLAR*RRLCGFG 280
I G+A ++ V L R RRLCG G
Sbjct: 91 ISPGMANRVQSVRLGRRRRLCGLG 114
>SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22)
Length = 432
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 256 MAAFMYRQPEAAQAPSTGQVYIPDRRRQTLAD 351
+A FM P A P+TG VY+ D R D
Sbjct: 50 LALFMRESPWADGEPTTGAVYVQDNGRLLSVD 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,932
Number of Sequences: 59808
Number of extensions: 347723
Number of successful extensions: 1034
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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