Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0397
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   2.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.2  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   4.2  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    27   9.6  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    27   9.6  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    27   9.6  

>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 95  VMMSCALLVXAYPYNPYYGNVD 160
           +++SC +L  AYPY+  YGN D
Sbjct: 7   LVVSCGILAAAYPYSQQYGNYD 28


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 274 RQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPEN 408
           +Q +    P     Y P R++Q     +Y P+Q+ +  Y QQ +N
Sbjct: 39  QQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQN 83


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 92  FVMMSCALLVXAYPYNPYYGNVDSLSYGS 178
           F M   A     YPY+PYY     L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 358  YVPQQENEVYYPQQPENPIFSPTQATXLADPTEKIE 465
            YVPQ+      P  PE    +P+Q   + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 364 PQQENEVYYPQQPENPIFSPTQATXLA 444
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 280 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 426
           P++ QAPS          +Q  A T  +PQ     + P QP + I  PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 340 SGGDDQVCTPGPLKAPVRLRAGGT*TR-PYTAXSSGVVVR 224
           SGGD   CT  P+  PV +   G   R P T+ SS V  R
Sbjct: 190 SGGDSSSCTSSPI-PPVIMNGNGKSERCPSTSSSSSVSPR 228


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 SSPPDPCRYQLRTATRKRSLLPSATREP 410
           + PP+P  YQL    R+ + +P+   EP
Sbjct: 63  ADPPNPSTYQLNVEAREVNTVPTRRSEP 90


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 SSPPDPCRYQLRTATRKRSLLPSATREP 410
           + PP+P  YQL    R+ + +P+   EP
Sbjct: 63  ADPPNPSTYQLNVEAREVNTVPTRRSEP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,197
Number of Sequences: 27780
Number of extensions: 243499
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)