Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0397
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 325  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATXLADPTEKIELYSTTLV 486
            DR R+TL      PQQ+ +      QQ +     P      A PT+K     + L+
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLI 1492


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 325 DRRRQTLADTSYVPQQENEVYYP 393
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 456  FSGVSQXGRLSGAEDRVLWLLRVIDFVFLLRYVAGIGKG 340
            FS VS  G   GAE R+  L     +  +++    +G G
Sbjct: 1058 FSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSG 1096


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 456  FSGVSQXGRLSGAEDRVLWLLRVIDFVFLLRYVAGIGKG 340
            FS VS  G   GAE R+  L     +  +++    +G G
Sbjct: 1054 FSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGSG 1092


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 361 VPQQENEVYYPQQPE 405
           VP + NE+YY   PE
Sbjct: 202 VPGKRNEIYYNCCPE 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,906
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)