Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0397
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   1.7  
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.2  
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    29   3.0  
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon...    28   3.9  
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si...    27   6.8  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    27   9.0  
At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-proly...    27   9.0  
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER...    27   9.0  

>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 267

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 290 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 433
           H  L +  C YLI  A+P    +T  ++KT   T S  RT S   L R
Sbjct: 91  HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138


>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Mus musculus [SP|Q60715];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 287

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 290 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 433
           H  L +  C YLI  A+P  + +T  + +T     S  RT S   L+R
Sbjct: 89  HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136


>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 277 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 417
           Q +  Q   TGQ YI      TL  T+Y     N VYY + P+  PI+
Sbjct: 326 QQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371


>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
           family protein / Gpi1 family protein similar to
           SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
           biosynthetic protein gpi1 {Schizosaccharomyces pombe};
           contains Pfam profile PF05024: N-acetylglucosaminyl
           transferase component (Gpi1)
          Length = 560

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 383 SITLSNQRTRSSAPLKRPNWLTPL 454
           S++ SN   ++ APLK+P W+  L
Sbjct: 49  SLSFSNSSPQTKAPLKKPKWVDDL 72


>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 448

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 71  IMKVMYAFVMMSCA-LLVXAYPYNPYYGNVD--SLSYGSGDSNRGGL 202
           ++K M A +  + + L+V AYP+  Y  N D  SL Y     N G +
Sbjct: 179 VVKPMLALLQQTSSYLMVNAYPFFAYAANADKISLDYALFKENAGNI 225


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 310 QVYIPDRRRQTLADTSYVPQQENEVYYPQQPE--NPIFSPTQ 429
           Q   P    QT   + + PQQ N ++   QP+  N IFS +Q
Sbjct: 8   QQQTPQPLFQTQQTSLFQPQQTNSIFSQSQPQQTNSIFSQSQ 49


>At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein SP:Q9M222; similar to
           FKBP-type peptidyl-prolyl cis-trans isomerase fkpA
           precursor (PPiase) (Rotamase)(SP:Q8X880) [Escherichia
           coli O157:H7] ; contains Pfam PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 242

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 269 CTASPKPHRR-LQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQR 406
           C+ S +P  + L R    Y++VA+  L +PA   + KTKS +  ++R
Sbjct: 32  CSLSEEPKDQCLSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDER 78


>At2g28700.1 68415.m03488 MADS-box protein-related contains
           INTERPRO: IPR002100 MADS-box domain
          Length = 329

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 298 PSTGQVYIPDRRRQTLAD---TSYVPQQENEVYYPQQPENPIFSPTQ 429
           P   Q  IP  +     D   ++++P    EVY P   ++ +++P Q
Sbjct: 248 PDMNQSIIPSNQGAEHVDFLESNFLPNNNQEVYIPVMDQDEVYNPNQ 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,916
Number of Sequences: 28952
Number of extensions: 233452
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)