Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0396
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159...    38   0.009
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    30   2.3  
03_05_0573 - 25737373-25737774                                         28   7.1  
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    28   9.3  

>02_05_0167 -
           26415319-26415494,26415591-26415840,26415909-26415974,
           26416457-26416600,26416813-26416868,26416966-26417101,
           26417190-26417277,26417379-26417482,26418515-26419180,
           26419337-26419432,26419974-26420242,26420334-26420489,
           26421153-26421192
          Length = 748

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 184 DVREITGVXLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 29
           DV  ++GV L EE  + LS+ +      +W+SEE RK+ +  D   F+Q  P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 276 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 386
           H H   +PPHL R+    + A P R  LH   PT  R
Sbjct: 20  HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56


>03_05_0573 - 25737373-25737774
          Length = 133

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 276 HLHVRRSPPHLPRKL----SLRIGARPRR*KLHAANPTSKRXTQGSYFGR*ERXSHR 434
           H   RR PP LPR +    S   G RP R  + A          G+ FG+ +R  HR
Sbjct: 53  HRLQRRDPPLLPRLVRWPPSSSPGVRPGRATVEAVAAEEAVVGSGASFGQAQRRHHR 109


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 265 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 354
           NGQH+  +D R   F G  RY   H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,171
Number of Sequences: 37544
Number of extensions: 301647
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)