Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0396
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 43 2e-04
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 40 0.002
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 1.0
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.8
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 29 3.1
SB_13389| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Frame = +1
Query: 274 HIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLIQLQNGKPKALILED------KSG 423
H+ TFD + FPG C YVLA D D FT++ Q LI ED SG
Sbjct: 1651 HVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMSQ---EDAMILITEDGNVKIHSSG 1707
Query: 424 XV---IELKENGQAILNGASKGFPIIEKDVFVSVXQATESVLGSLYGLMVFCXSKTXGCX 594
V +++ G IL+G + P+ K++ V+ + VL G+ + C + C
Sbjct: 1708 RVESMVKIDAEGNKILDGYNSELPVQTKNMTVT-REGPFVVLRHDIGIEILCDMEHNACT 1766
Query: 595 Y 597
+
Sbjct: 1767 F 1767
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 271 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGK 390
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 274 HIFTFDGRHLTFPGNCRYVL 333
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = +1
Query: 274 HIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNGKPKALILEDKSGXVIEL 438
H TFD R + G C YVL+ H H + FT+ I++ + + LI+ + L
Sbjct: 857 HFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSRQLIVSLAGATPVTL 916
Query: 439 --KENGQAILNGASK 477
E +LN K
Sbjct: 917 GGVEGSPTVLNSNGK 931
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 274 HIFTFDGRHLTFPGNCRYVLAHD 342
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 374
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 382 NGKPKALILEDKSGXVIELKENGQAILNGASKGFPIIEKDVFVSVXQATESVLGSLYG 555
NGKP A L K+G +E E+ N ++G ++ D SV + E VL S+ G
Sbjct: 1058 NGKPPASGLTSKAGIQVEDLEHTSE--NSITQGLTLVNGDGDNSVNRKPEPVLTSIAG 1113
>SB_13389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 382 NGKPKALILEDKSGXVIELKENGQAILNGASKGFPIIEKDVFVSVXQATESVLGSLYG 555
NGKP A L K+G +E E+ N ++G ++ D SV + E VL S+ G
Sbjct: 38 NGKPPASGLTSKAGIQVEDLEHTSE--NSITQGLTLVNGDGDNSVNRKPEPVLTSIAG 93
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 504 HILFDDRESFGSSVQNSLSIFFQFDDXSALIFQNKSLGFXVLKLD*QREVSIDV 343
HIL ++ FGS + S+ F L+F + +G V + D + +S++V
Sbjct: 104 HILVNNAAYFGSKGMSRFSVAFPILFSRVLMFHGRVIGLDVEEKDWHKTMSVNV 157
>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 274 HIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKALILEDKSGXVIELKENGQ 453
HIF DG H FP + V AH + T I+L L+LE + EL+ +
Sbjct: 258 HIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETRLEDATELEPDDP 316
Query: 454 AIL 462
L
Sbjct: 317 TAL 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,222
Number of Sequences: 59808
Number of extensions: 341997
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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