Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0395
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   173   2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    76   7e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    75   9e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    72   1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    57   3e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    48   2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    46   8e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   8e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    38   0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   6.9  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   6.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   9.1  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  173 bits (422), Expect = 2e-44
 Identities = 94/149 (63%), Positives = 105/149 (70%), Gaps = 3/149 (2%)
 Frame = -2

Query: 701 ASSSSLREVLRTFPTVQVITIGXRRFRLPRGSFPTFVLGYGSLRHPRDHI*LHHEVRR-- 528
           A SSSL +     P  QVITIG  RFR P   F    LG   L +   H   ++ + +  
Sbjct: 231 AQSSSLEKSYE-LPDGQVITIGNERFRAPEALFQPSALG---LENAGIHEATYNSIMKCD 286

Query: 527 -GHP*GLDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 351
                 L  N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSIL
Sbjct: 287 VDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSIL 346

Query: 350 ASLSTFQQMWISKQEYDESGPSIVHRKCF 264
           ASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 347 ASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 35/83 (42%), Positives = 58/83 (69%)
 Frame = -2

Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 333
           L +N VLSGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357

Query: 332 QQMWISKQEYDESGPSIVHRKCF 264
           +++ I+ +EY ++  +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 616 PEVLFQPSFWGMEACGIHETTYNSIMKCDVDIRKDL 509
           PEVLF P   G EA G+H   + SI+  D+D+R  L
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTL 298


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
 Frame = -2

Query: 503 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTF 333
           N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407

Query: 332 QQMWISKQEYDESGP---SIVHRKC 267
            Q+WIS+QEY+E G    +++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = -2

Query: 503 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQ 330
           N V++GGT++ PG+++R+Q E+  LA  S + +           +VW GGSILASL  FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405

Query: 329 QMWISKQEYDESG 291
            +W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -3

Query: 613 EVLFQPSFWGMEAC---------GIHETTYNSIMKCDVDIRKDL 509
           E+LF PSF    +          G+HE  Y SI+ CD ++R  L
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 15/141 (10%)
 Frame = -2

Query: 668 TFPTVQVITIGXRRFRLPRGSFPTFVLGY---GSLRHPRDHI*LHHEVRRGHP*GLDANT 498
           T P  +VI +G  R+  P   F   ++G    G      D I       R +   L    
Sbjct: 241 TLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKY---LYRAI 297

Query: 497 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 351
           VLSGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357

Query: 350 AS-LSTFQQMWISKQEYDESG 291
           A  ++    MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = -3

Query: 619 CPEVLFQPSFWGMEACGIHETTYNSIMKCDVDIRKDL 509
           CPE LFQP   G E  G+ E  +++I   DVDIRK L
Sbjct: 257 CPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYL 293


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
 Frame = -2

Query: 515 GLDANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 378
           GL  N VLSGG+T++    +R+Q+++  +    +               + +I+   ++ 
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384

Query: 377 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 273
           +VW GGS+LA    F     +K +Y+E G SI  R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = -2

Query: 503 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
           N V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +   
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380

Query: 323 WISKQEYDESGPSIVHRK 270
            I++ EY E G +I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -2

Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 333
           L +N +++GG    PG+  R+++E+T++ P    I +          W G S  +    F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693

Query: 332 QQMWISKQEYDESGPSIV 279
           +   ++++EY E GP  +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 616 PEVLFQPSFWGMEACGIHETTYNSIMKCDVDIRKDL 509
           PEV+F PS  G++  GI E   + + +  ++ ++ L
Sbjct: 599 PEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKL 634


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -2

Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 342
           L ++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I   +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588

Query: 341 STFQQMWISKQEYDESGPSIVHRK 270
               ++WI   ++   G  ++  K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 371 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 270
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 743 TSLLEXXAENGPPVASSSSLREVLRTFPTVQVITIGXRR 627
           +S L   AEN PPVA  S    +L T P +Q  TI   R
Sbjct: 431 SSPLASNAENKPPVAQQSP-PVLLPTLPPIQTTTIQTSR 468


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 379 TPYGSVDRSXPPSLPSNRCGSRNRSTTSLAPP 284
           TP  +     PPS+PS+R   R  S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 489 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPXLPLYLPTDVDLET 310
           RWY   PW    + KG+ +     +E  +  SSR   +  + W+D     YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533

Query: 309 GV 304
            V
Sbjct: 534 AV 535


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 446 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 336
           KEI++ A S + +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -2

Query: 521 P*GLDANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 369
           P G  A +V +GG+  +PGI   +   I          + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,791
Number of Sequences: 5004
Number of extensions: 60734
Number of successful extensions: 186
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)