Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0395
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             147   9e-38
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  147 bits (357), Expect = 9e-38
 Identities = 86/133 (64%), Positives = 94/133 (70%), Gaps = 4/133 (3%)
 Frame = -2

Query: 701 ASSSSLREVLRTFPTVQVITIGXRRFRLPRGSFPTFVLGYGSLR-HPRDHI*LHH---EV 534
           ASSSSL +     P  QVITIG  RFR P   F    LG  +   H   +  +     ++
Sbjct: 6   ASSSSLEKSYE-LPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDI 64

Query: 533 RRGHP*GLDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 354
           R+     L ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSI
Sbjct: 65  RKD----LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSI 120

Query: 353 LASLSTFQQMWIS 315
           LASLSTFQQMWIS
Sbjct: 121 LASLSTFQQMWIS 133



 Score = 81.8 bits (193), Expect = 6e-18
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = -3

Query: 619 CPEVLFQPSFWGMEACGIHETTYNSIMKCDVDIRKDL 509
           CPE LFQPSF GMEACGIHETTYNSIMKCDVDIRKDL
Sbjct: 32  CPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 68


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 451 IRSAIPGYMVVPPDNTVLASSPYGCPRRTS*WSYMWSRGCRKLPYPRTKVGKEPLGK 621
           I+   P Y +  P  +++ SS    P +   +S  W+ G  +        GK+ LGK
Sbjct: 487 IQGLPPPYRLNKPLMSLITSSEVRQPGKAPNYSVNWTIGQLEAEVINCTTGKDELGK 543


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 CWRQVLTDVHVALHDGVI 553
           C +Q+L  VH   H+GV+
Sbjct: 14  CIQQILESVHHCHHNGVV 31


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 498 RIVRWYHHVPWNRRPYAK 445
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 498 RIVRWYHHVPWNRRPYAK 445
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,897
Number of Sequences: 438
Number of extensions: 4775
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)