Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0392
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   4.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.6  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.6  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 270 SFESVIASEVSRVPFETLVATKAGN--DDCKTLMNNNQVLHLIRTRPQYDVVLVESFNSD 443
           ++E++   E++ VP          N  +  K   + ++ LH+I   P+Y V+L ++    
Sbjct: 159 TYEALKPEEINFVPLNQTQEINGSNLLEFYKDSKHLSRYLHIIANSPRYPVIL-DAKRRV 217

Query: 444 CGIALAANLSXPYIALNPKPIHLGTT 521
           C +    N     I+++ + I +  T
Sbjct: 218 CSLPPIINSEFSKISVDTRDIFIDVT 243


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 254 CLSLNKMSLYEAGASDIGKWLIRVTSLFRFASSLN 150
           C  L+ + LY +  S I  W+  + S F F  SLN
Sbjct: 639 CRWLHMVHLYSSRTS-ITSWIYSIASKFYFIDSLN 672


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  VRVCINMTKRTIV-CIFVTIILTTDCYKILGIF 108
           V  CI +T   +  C+ VT+I    C K+  +F
Sbjct: 147 VAQCIKVTVIFLAQCVKVTVIFLAQCVKVTAVF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,429
Number of Sequences: 5004
Number of extensions: 50704
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)