Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0392
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0210 + 32386438-32386452,32386543-32386617,32386716-323868...    29   3.3  
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    29   4.3  
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    28   7.5  
03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429     28   7.5  

>03_06_0210 +
           32386438-32386452,32386543-32386617,32386716-32386832,
           32387006-32387076,32387202-32387496,32387594-32387883,
           32388122-32388137
          Length = 292

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 533 YLIDCSAKVYRLRVQCYVRRTQICRQCYSAVTVK 432
           Y IDC    Y+   Q Y++ + I + C   V VK
Sbjct: 38  YDIDCVPNAYKRNRQAYIKDSSISKNCTQEVKVK 71


>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 488 IEPEAYTPWHYNRLGINFN 544
           I PEAYT W+Y +L    N
Sbjct: 54  INPEAYTAWNYRKLAFQHN 72


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 307 TRDTSLAITDSKDKPLYTVCHLI--KCLCTKPEHLTSESG*SGSHRCFDLLV 158
           T +  ++  +  D  L +V  L   + LC+  EH  SE   +GSH C D+L+
Sbjct: 473 TAERRISFKEKLDSALGSVLPLSMKEKLCSLMEHHCSEVHAAGSHTCEDVLI 524


>03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429
          Length = 483

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 103 IFPSLDRTNYLTYRDLFKELANRNNDVTLIS 195
           +FP L   + + Y +L K LA R +DVT +S
Sbjct: 13  VFPWLAFGHMIPYLELSKRLAARGHDVTFVS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,111
Number of Sequences: 37544
Number of extensions: 315296
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)