Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0392
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    29   2.7  
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro...    29   3.6  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    29   3.6  
At4g32790.1 68417.m04665 exostosin family protein contains Pfam ...    27   8.3  
At3g09990.1 68416.m01199 equilibrative nucleoside transporter, p...    27   8.3  
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P...    27   8.3  

>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 165 KSKQRCDPDQPLSDVRCSGFVQRH-FIK*QTVYKGLSFESVIASEVSRVPFETLVATKAG 341
           KS   C PD     +    F+Q   F K Q +   +  + +  + ++ V  E+ +    G
Sbjct: 212 KSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEMESTLIQMLG 271

Query: 342 NDDCK 356
            DDCK
Sbjct: 272 EDDCK 276


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 488 IEPEAYTPWHYNRLGINFN-AAM*PKPGL 571
           I PEAYT W+Y +L +    A + P P L
Sbjct: 54  INPEAYTAWNYRKLAVEDRLARIEPDPNL 82


>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
           protein low similarity to SP|Q61420 CMP-sialic acid
           transporter {Mus musculus}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 340

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 111 WKYSQYFITVSC*YYCHENTNNCAFCHIDADTYELL 4
           WK  + F+  S  Y  H N       ++D  TY+++
Sbjct: 74  WKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIM 109


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to Splicing factor 3B subunit 3
            (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
            (Pre-mRNA splicing factor SF3b 130kDa subunit)
            (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
            A subunit region
          Length = 1329

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 328  ATSVSKGTRDTSLAITDSKDKPLYTVCHLIKCLCTKPEHLTSES 197
            A SV+   R  S+AI   KD   + + HL+K     PE+ + ES
Sbjct: 1119 ANSVAVSDRKGSIAILSCKDHSDFGMKHLVKIPHDNPEYSSPES 1162


>At4g32790.1 68417.m04665 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 593

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 166 NRNNDVTLISHFPMSDAPASYRDILLSDRQCI 261
           NR+ D+ + S  P S    SY + + S + CI
Sbjct: 455 NRDPDMKIFSEIPKSKGKKSYMEYMKSSKYCI 486


>At3g09990.1 68416.m01199 equilibrative nucleoside transporter,
           putative (ENT2) identical to putative equilibrative
           nucleoside transporter ENT2 [Arabidopsis thaliana]
           GI:16518991; contains similarity to SWISS-PROT:Q14542
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type,
           36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
           protein, 36 kDa, Delayed-early response protein 12)
           [Homo sapiens]; contains Pfam profile PF01733:
           Nucleoside transporter
          Length = 417

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  LTVIKYWEYFHRWIAPTI*LTVIY 151
           LT++ Y+ Y   W  P+  LT+IY
Sbjct: 37  LTIVDYYAYLFPWYHPSRILTIIY 60


>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
           F-box domain PF:00646; similar to F-box protein family,
           AtFBX9 (GP:20197985) {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +3

Query: 303 RVPFETLVATKAGNDDCKTLMNNNQVL--HLIRTRPQYDVVLVESFNSDCGI-ALAANLS 473
           RVP ++L   +       +L ++N+ +  HL+R+RPQ+       F +D  + ++A N S
Sbjct: 17  RVPPQSLARFRTVCKQWNSLFDDNKFVNDHLVRSRPQF------MFRTDSKMYSVAVNFS 70

Query: 474 XPYIALN 494
            P+I ++
Sbjct: 71  GPWIEVH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,149
Number of Sequences: 28952
Number of extensions: 262843
Number of successful extensions: 554
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)