Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0388
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      30   2.2  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.1  
SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   6.7  
SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)         29   6.7  
SB_35553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 108 KK*LKFSLDSP*SLLTRLSCRKSAPWAMXFLSP 10
           K  L+  +D P S + RLSC K   WA+ +++P
Sbjct: 82  KSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTP 114


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 108 KK*LKFSLDSP*SLLTRLSCRKSAPWAMXFLSP 10
           K  L+  +D P S + RLSC K   WA+ +++P
Sbjct: 291 KSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTP 323


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 141  LSASKKKVKRPARKFQRYPKKQLLTSRKSMKTSA 242
            +  S+K+V+R +RK  RY +KQ   SRK +++S+
Sbjct: 1215 VECSRKQVRR-SRKQARYSRKQARISRKQIRSSS 1247


>SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 526

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 26  IAHGALFLQDNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQ 178
           + H  +  +DN++  D     EN    +   +ND D L  R+++  +K+G+
Sbjct: 247 VEHYRVIFKDNMLTVDEEEYFENLTKLVEHYQNDSDGLCTRLRQPVKKSGR 297


>SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)
          Length = 629

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 382 IINTYV-ETVKKIAELYXIQLEPQVRQLYETLAALLKEYLDGLTTSWRTSRL*SQISSKN 558
           +I+TY+  T+  I       ++P+       L       +  L +S R +   +  +S N
Sbjct: 529 LIDTYIPSTIIVIISWISFWIDPETAPARVALGITTVLTMTTLISSARANLPKASANSAN 588

Query: 559 TSLNCKSSRM*SPIYSKSNPNNCGSSKGTSFSNSA 663
           TS N  S+   +  ++K++ N+  +S   + +NSA
Sbjct: 589 TSHNKASANSANTSHNKASANSANTSHNKASANSA 623


>SB_35553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 744 GNXRVRSRXWTPDTGTSNFPXNCXPNARKPEXXGRSGFHXLXFRRKL 884
           G   V ++  + DTG S     C P A  P    R G H +  R++L
Sbjct: 153 GTYPVVNKIGSEDTGASPASIACVPKATCPYKEYRGGLHMIHCRQEL 199


>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 59  LVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQKTAP 211
           L+ + Y LS  +  +FLN ++  +  +     ++ E+ G+EI  +S  + P
Sbjct: 32  LLAATYALSYFSRTFFLNFVELQIGIMMGENNDRQEELGREIHALSSASKP 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,729,272
Number of Sequences: 59808
Number of extensions: 472493
Number of successful extensions: 1519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)