Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0388
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical pr...    33   0.37 
AC024791-15|ABQ13056.1|  464|Caenorhabditis elegans Hypothetical...    31   1.1  
AF024492-7|AAF98618.3|  179|Caenorhabditis elegans Hypothetical ...    30   2.0  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z19153-4|CAA79548.1|  525|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    28   7.9  
AC024791-16|AAF60674.3|  468|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical
           protein F39H2.4 protein.
          Length = 224

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 53  DNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQ 199
           ++L+KS   LS ++ N   N+LKN+LD L    K+       + STIS+
Sbjct: 126 NSLIKSMNNLSHDSMNGQFNSLKNNLDELNIEKKQLEVAIADQSSTISE 174


>AC024791-15|ABQ13056.1|  464|Caenorhabditis elegans Hypothetical
           protein Y47G6A.19c protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
 Frame = +1

Query: 259 YQEVTDDKTLKELSHAFNEIVQFFAKIFDTIYK-GTEPIVESIINTYVETVKKIAELYXI 435
           +++ T    ++E      + VQ   +++ T Y+ GT P +      + +   KI   Y I
Sbjct: 305 HRKFTYAPDIEETRRVAAKAVQELGRMYGTKYRHGTGPEIICGSTDWAKETLKIKYSYTI 364

Query: 436 QLEP----------QVRQLYETLA---ALLKEYLDGLTTSWRTSRL*SQISSKNTSLNCK 576
           +L P             QL  T     A +   LD +T  W++SR+     S+     C 
Sbjct: 365 ELRPGYEEWNGFVLDKNQLIPTAKETWAGVTVVLDEVTNQWKSSRVRESELSRLRQEKCS 424

Query: 577 SSRM*SPIYSKSNPNNCGSSKGTSFSNSAELPEHC 681
                   + +S+PN C  S+ T   + A+    C
Sbjct: 425 DRLPGCAYWLQSSPNICRFSQSTMVRDCAKTCNLC 459


>AF024492-7|AAF98618.3|  179|Caenorhabditis elegans Hypothetical
           protein F14F9.6 protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 787 PVSGVXLL-DLTRXLPRIVPLLFXN*TNIG 701
           P++ V L+ DL R LP+I+PLLF     +G
Sbjct: 80  PLNSVKLMSDLLRQLPKIIPLLFLTIVTVG 109


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -1

Query: 437 CXXYNSAIFFTVSTYV-LMMLSTIGSVPL*MVSNILAKNWTISLKACDSSFRVLSSVTSW 261
           C  Y+S   F    Y  L+ L+   +  +  +S  +A    ++  A  S FR   +   W
Sbjct: 434 CLMYSSMGTFVSGFYTSLLSLAPQYTATMSAISMFVAMIGRLTTPAVMSMFRKDGTAAEW 493

Query: 260 *NCSILCGSLHRFS*SKELFFG 195
            N  I C   H FS S  L FG
Sbjct: 494 QNIFIGCSLAHIFSGSIFLLFG 515


>Z19153-4|CAA79548.1|  525|Caenorhabditis elegans Hypothetical
           protein C38C10.4 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 581 ELLQFRLVF-FEEICDQSREVRHEVVKPSKYSLSK 480
           EL  F+L+F + E CD +R +  + +K  K+S ++
Sbjct: 78  ELNMFKLIFNYPEACDSTRRIVQQALKMEKFSKAR 112


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = +1

Query: 274 DDKTLKELSHAFNEIVQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAELYXIQLEPQV 453
           DDKT   L+HAF + +QF  +I           V   + TY  T KK AE     LE  V
Sbjct: 78  DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 127

Query: 454 RQLYETLAALLK 489
           R   E L  + K
Sbjct: 128 RLATEKLCTIPK 139


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = +1

Query: 274 DDKTLKELSHAFNEIVQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAELYXIQLEPQV 453
           DDKT   L+HAF + +QF  +I           V   + TY  T KK AE     LE  V
Sbjct: 87  DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 136

Query: 454 RQLYETLAALLK 489
           R   E L  + K
Sbjct: 137 RLATEKLCTIPK 148


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -1

Query: 767 SRSNSXITQNRPTSLXKLDQYRQRADFVRQCSGSSALLEKEVPLLEPQLFGLDFEYIGDH 588
           SR+N+  T      L +  +Y    +      G+ A  ++ +P   PQ +    + +  H
Sbjct: 79  SRNNNCATSYERKILCRACRYTNCLE-AGMSRGNEASRQRNIPSNSPQTYSGYSKILKTH 137

Query: 587 IRELLQFRLVFFEEICDQSR 528
             +LLQF L   E+   Q R
Sbjct: 138 HEDLLQFYLEEVEKTMSQKR 157


>AC024791-16|AAF60674.3|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.19a protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 496 LDGLTTSWRTSRL*SQISSKNTSLNCKSSRM*SPIYSKSNPNNCGSSKGTSFSNSAELPE 675
           LD +T  W++SR+     S+     C         + +S+PN C  S+ T   + A+   
Sbjct: 402 LDEVTNQWKSSRVRESELSRLRQEKCSDRLPGCAYWLQSSPNICRFSQSTMVRDCAKTCN 461

Query: 676 HC 681
            C
Sbjct: 462 LC 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,877
Number of Sequences: 27780
Number of extensions: 367884
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)