Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0388
(896 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ... 29 3.2
At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138... 29 5.5
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 28 7.3
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 28 7.3
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 28 7.3
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 28 7.3
At1g27910.1 68414.m03420 U-box domain-containing protein contain... 28 7.3
At1g05710.4 68414.m00595 ethylene-responsive protein, putative s... 28 7.3
At1g05710.3 68414.m00594 ethylene-responsive protein, putative s... 28 7.3
At1g05710.2 68414.m00593 ethylene-responsive protein, putative s... 28 7.3
At1g05710.1 68414.m00592 ethylene-responsive protein, putative s... 28 7.3
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 28 9.7
At5g14090.1 68418.m01648 hypothetical protein 28 9.7
At4g12850.1 68417.m02013 far-red impaired responsive family prot... 28 9.7
>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 338
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -1
Query: 377 STIGSVPL*MVSNILAKNWTISLKACDSSFRVLSSVTSW*NCSILCGSLHRFS*SKELFF 198
S +GSV L +++ +T+ +K CD+ ++ ++ +CSI + RF +
Sbjct: 119 SKLGSVKLPRTKDVMVNGFTVKVKFCDTC-QLYRPPRAF-HCSICNNCVQRFD-HHCPWV 175
Query: 197 GISLKFPGRPFHF-FL*CAQLMCL 129
G + PF FL C+ L+C+
Sbjct: 176 GQCIALRNYPFFVCFLSCSTLLCI 199
>At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter-related protein'
based on similarity to axi 1 protein (GB:X80301)
(GI:559920) from [Nicotiana tabacum], which, due to
scienitific fraud was retracted. Retraction in: Schell
J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.;
expression supported by MPSS
Length = 559
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 447 PSETIIRNLGGLTQGVFRWLDDLVAHFAALITDFFEKHKPELQEFTN 587
PS I GG G R L+ L F+ L+T HK EL +TN
Sbjct: 401 PSNASIYIAGGEPFGGSRALEPLAKEFSNLVTKETLAHKGELLPYTN 447
>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
kinase, putative brassinosteroid-insensitive protein
BRI1 - Arabidopsis thaliana, PIR:T09356
Length = 836
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -1
Query: 845 AXXLXFSGVGXTVXXKIAGTSIWGPXSRSNSXITQNRPTSLXKLDQYRQRADFVRQCSGS 666
A L + G+G T+ KI S N+ I + P SL L R F + SGS
Sbjct: 98 AIQLPWKGLGGTISEKIGQLGSLRKLSLHNNVIAGSVPRSLGYLKSLRGVYLFNNRLSGS 157
Query: 665 SALLEKEVPLLE 630
+ PLL+
Sbjct: 158 IPVSLGNCPLLQ 169
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 238
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 238
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 238
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g27910.1 68414.m03420 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 768
Score = 28.3 bits (60), Expect = 7.3
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 713 DQYRQRADFVRQCSGSSALLEKEVPLLEPQLFGLD--FEYIGDHIRELLQFRLVFFEEIC 540
D R+ D V+Q GS LLE + L E F LD + IGD I LLQ F
Sbjct: 99 DSLRRVEDIVQQSIGSQ-LLEILMEL-ENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSD 156
Query: 539 DQSREVRHEVVKPSKYSLSKAAKVSYNCL 453
+ EV H+ + S+AA CL
Sbjct: 157 NNELEVFHQAATRLGITSSRAALTERRCL 185
>At1g05710.4 68414.m00595 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 110 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 220
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.3 68414.m00594 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 110 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 220
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.2 68414.m00593 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 171
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 110 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 220
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.1 68414.m00592 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 110 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 220
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 749 ITQNRPTSLXKLDQYRQRADFVRQCSGSSALLEKE 645
I + RPT + LD+ R RAD +R ++KE
Sbjct: 720 IRKGRPTKMSPLDEARARADKLRNFKADLQKMKKE 754
>At5g14090.1 68418.m01648 hypothetical protein
Length = 361
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 574 KSSRM*SPIYSK-SNPNNCGSSKGTSFSNSAELPEHCRTKSARCLYW---SNLXREVGRF 741
+ S M + IYS +NP SSK S + E HC S RC+ + S+ + G
Sbjct: 289 EESIMETKIYSSVANPK---SSKANSIDLTFEKVNHCHEASKRCIQYELRSSRSAKNGEH 345
Query: 742 WVIXELD 762
W+ + D
Sbjct: 346 WIKTDED 352
>At4g12850.1 68417.m02013 far-red impaired responsive family protein
/ FAR1 family protein weak similarity to far-red
impaired response protein [Arabidopsis thaliana]
GI:5764395; contains Pfam profile PF03101: FAR1 family
Length = 183
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 405 CLDVRVNDALHNRLSTFVDGIEYLSEELDYFVESM 301
C D R+ D +RL +F+D +E+ +EEL V +
Sbjct: 135 CQD-RLCDVYRDRLVSFIDNVEHYTEELSLKVRDI 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,160
Number of Sequences: 28952
Number of extensions: 343871
Number of successful extensions: 1141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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