Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0387
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   1.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   7.2  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   9.5  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 345  DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 506
            +++  I S+L + +   Y   + + +AD A+    QP GD L    +W ++  T
Sbjct: 857  EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 234 SVHVSGLPPYGTSXKIAPVTTXTEMNKETCLQVNSTQDQLQDIQSVLP 377
           ++HV+G PP   S +  P +  + MN E  L  ++  +QL     + P
Sbjct: 203 TIHVTGTPPGAVSQRSEPDSRLSSMN-EMQLLASAAANQLDAAPRITP 249


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 499  LYLTHIVYLFSLSPTGCT 446
            +Y  H+VY+ SLSP  C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +3

Query: 243  VSGLPPYGTSXKIAPVTTXTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQD 422
            VS +  Y +S ++ P  T T +N+E    ++ + +     + V+P + D  Y  T T+  
Sbjct: 811  VSSISTYSSSIELTPQITKTSLNREK-PALHGSINLKHSTRPVVP-IADGIYAST-TLHP 867

Query: 423  ADTAKWQMV 449
             D AK ++V
Sbjct: 868  IDNAKNRLV 876


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 231 LSVHVSGLPPYGTSXKIAPVTTXTEMNKE 317
           LSVH S +PP+ T     P  + T + KE
Sbjct: 469 LSVHESEMPPHVTRDYTQPAASATPVPKE 497


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 315 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 437
           ET LQ N+T   L +++ V PD   +K IG T   Q  + AK
Sbjct: 26  ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,333
Number of Sequences: 5004
Number of extensions: 60242
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)