Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0387
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404...    28   7.5  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     28   7.5  

>10_07_0152 +
           13439178-13439517,13440072-13440229,13440431-13440477,
           13441115-13441178,13441600-13442237,13442328-13442562
          Length = 493

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 79  DKGSPPQWSPVYTVKGLLNIPYAELHEP 162
           D GS  +W P+    G +N P   LH P
Sbjct: 391 DSGSTSEWRPLIKKYGYVNCPTVRLHIP 418


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 517 IPFNVFLYLTHIVYLFSLSPTGCTICHLAVSA-SCIVSVPIYLK-SVMSGSTDWMSWS 350
           +  NV L   HI++  SLS  G  +  L V A  C++   + LK  V++ +  W SW+
Sbjct: 179 LTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIIVVTVTLAWSSWA 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,123,040
Number of Sequences: 37544
Number of extensions: 428668
Number of successful extensions: 995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)