Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0387
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 50 3e-06
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_1137| Best HMM Match : CC (HMM E-Value=2) 31 1.4
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.6
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13) 28 7.6
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 73.3 bits (172), Expect = 2e-13
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +1
Query: 88 SPPQWSPVYTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 237
+PP W YT+ G+L +PYAE+ EPF AW+D +SRIDYYGGM T+Q
Sbjct: 337 TPPTWPQEYTLTGVLRLPYAEIEEPFQAWFDGGRKRSRIDYYGGMDSTFQ 386
Score = 68.9 bits (161), Expect = 4e-12
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 1/164 (0%)
Frame = +3
Query: 198 KNRLLWRYGQDLSVHVSGLPPYGTSXKIAPVTTXTEMNKETCLQVNSTQDQLQDIQSVLP 377
++R+ + G D + + G + +I P++T T++N +C Q N T QSVLP
Sbjct: 372 RSRIDYYGGMDSTFQRGDILTAGANFRICPMSTETKLNVRSCFQTNGTSASPVGPQSVLP 431
Query: 378 DMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKTLKGILCPYRSDMR*KVS 557
D+ F ++G T D + W+ VG K NKYTM+ ++ P +M +
Sbjct: 432 DLAKFSFVGNSTYGDVKCSIWEYKLTVGHKRNKYTMYT----SMHDPPAPIHYEM---LG 484
Query: 558 IRSWAPXXXXXXXXXXXXXLMRFDP-DVFKVDSNMQCTGXPGPG 686
+ P +VF+ + CTG PGPG
Sbjct: 485 FDDLIGSHYDQYELDYSNYSPQAPPEEVFQTPEGLVCTGFPGPG 528
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 524 PIPVRYEMKGFNSLLGS 574
P P+ YEM GF+ L+GS
Sbjct: 475 PAPIHYEMLGFDDLIGS 491
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 64.5 bits (150), Expect = 9e-11
Identities = 31/101 (30%), Positives = 53/101 (52%)
Frame = +3
Query: 189 QQIKNRLLWRYGQDLSVHVSGLPPYGTSXKIAPVTTXTEMNKETCLQVNSTQDQLQDIQS 368
Q ++R+ + YG D + + + P+G + KI P+ T + C + T+ +Q
Sbjct: 76 QHNRSRIDYYYGTDRTFQRADVGPHGEAFKIVPIYTDEKGGYIGCWHLEGTERTPIVVQP 135
Query: 369 VLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWV 491
++P+MTDFK+ G E A TAKW+ +N +T+WV
Sbjct: 136 IVPNMTDFKFAGYEVYHGASTAKWEYRYLAFGLMNAHTIWV 176
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +1
Query: 82 KGSPPQWSPV-----YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 237
+ +PP P Y G L +P++++ EPF W+ +++++SRIDYY G +T+Q
Sbjct: 37 RSAPPPMKPFHFPRNYHATGKLQLPHSKIEEPFEVWFSAQHNRSRIDYYYGTDRTFQ 93
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 524 PIPVRYEMKGFNSLLGS 574
P PVRYEMKG+++LL S
Sbjct: 182 PRPVRYEMKGYDNLLAS 198
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 57.6 bits (133), Expect = 1e-08
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +1
Query: 112 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 237
Y G+L++PY ++ EPF WY + SRIDYYGGM +TYQ
Sbjct: 39 YHATGVLSLPYGDIKEPFEVWYSGLHGMSRIDYYGGMDRTYQ 80
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +1
Query: 112 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 237
Y G+L +P +E++EPF W+ +++SRIDYYGG VKTYQ
Sbjct: 902 YHATGVLRLPTSEVNEPFEIWFSRPHNQSRIDYYGGDVKTYQ 943
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 112 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 237
Y G L++PY + EPF +WY + SRIDYY GM KT+Q
Sbjct: 1020 YHAIGTLHLPYDNIREPFESWYARDYNMSRIDYYYGMDKTFQ 1061
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +1
Query: 112 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMV 225
Y V+G L++PY E+ EPF AWY + SRIDYY G V
Sbjct: 878 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKV 915
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Frame = +3
Query: 201 NRLLWRYGQDLSVHVSGLPPYGTSXKIAPVT--TXTEMNKET--CLQVNSTQDQLQDIQS 368
+R+ + YG D + L YG K+ P +++K T C + Q QS
Sbjct: 1048 SRIDYYYGMDKTFQRGDLMDYGVLVKVVPAHWGRDEDLDKNTISCWYRPGFRWSQQRGQS 1107
Query: 369 VLP-DMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKK 503
VLP + FK+IG E T K+Q + K N YT W+ K
Sbjct: 1108 VLPAHLEHFKFIGEEIRSGMPTFKYQRNTTIFHKKNSYTFWMTKAK 1153
>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 112 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGG 219
Y V+G L++PY E+ EPF AWY + SRIDYY G
Sbjct: 72 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYG 107
>SB_1137| Best HMM Match : CC (HMM E-Value=2)
Length = 410
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +3
Query: 228 DLSVHVSGLPPYGTSXKIAP---VTTXTEMNKETCLQVNSTQDQLQDIQSVLP-DMTDFK 395
D ++ L G KI P V T ++ N +C + QSV+P ++T+FK
Sbjct: 184 DKTIQRGDLGANGMLFKIVPMHYVVTPSDKNIISCWYKPLATWLPRAGQSVVPTNLTEFK 243
Query: 396 YIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKK 503
+ ET + + ++Q +K N Y +W+ K
Sbjct: 244 MVAIETHRGHPSFRFQRKFSELNKTNTYILWITTHK 279
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 276 KIAPVTTXTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTA 434
K++PV T E ++ + Q +++DI ++ D+ D KY ADT+
Sbjct: 4087 KLSPVGTDVETIEQQMDDLKELQKEVEDIDELIADLNDQKYRVALQNPTADTS 4139
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 79 DKGSPPQWSPVYTVKGLLNI 138
DKGSPPQ+S + + +LNI
Sbjct: 451 DKGSPPQYSEITVIVKVLNI 470
>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
Length = 317
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 327 QVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQM--VQPVGDKLNKYTMWV 491
Q T + QD +S ++D KYIG + + T +W + +P +L+ + WV
Sbjct: 153 QEGYTGELCQDCKSPPIGISDEKYIGNSRIAGSSTGQWVLDYFEPYKGRLHGPSSWV 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,299,701
Number of Sequences: 59808
Number of extensions: 499627
Number of successful extensions: 1459
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -