Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0387
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -3

Query: 445 ICHLAVS--ASCIVSVPIYLKSVMSGSTDWMSWS*SCVELTCRH---VSLFISV 299
           + +LAV+  A+ I ++P ++  V  GSTDW+  S  C    CR+   V LF S+
Sbjct: 57  LLNLAVADLANLIFTIPEWIPPVFFGSTDWLFPSFLCP--VCRYLECVFLFASI 108


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 315 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAK 437
           +TCLQ  S+Q++   +Q V+P   +F   G+ + + ++  +
Sbjct: 318 KTCLQAESSQNKSSSMQPVMPVKIEFLLTGSVSQKISEAER 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,423
Number of Sequences: 27780
Number of extensions: 358302
Number of successful extensions: 957
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)