Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0387
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 653 TVNFEDVRIESHQYCNLHNPDSNDRSGSP 567
           T+N   V+I+  Q C++ +  S + + SP
Sbjct: 389 TLNIPSVKIDEDQKCSIESITSVNSTSSP 417


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 494 IQEDIKGDSVPIPVR-YEMKGFNSLL 568
           IQ ++ GD+VP P+  +E  G  +++
Sbjct: 182 IQVNVSGDNVPQPIESFEAAGLRNIV 207


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 578 SGSPGAN*NLSSHIGPVWAQN 516
           SGS G+N N+S  I  V  QN
Sbjct: 233 SGSKGSNINISQVIACVGQQN 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,097
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)