Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0387
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61390.1 68418.m07702 exonuclease family protein contains exo... 33 0.29
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 33 0.29
At5g07710.1 68418.m00884 exonuclease family protein contains exo... 31 0.67
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 30 2.0
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 30 2.0
At2g26380.1 68415.m03166 disease resistance protein-related / LR... 29 3.6
At1g53815.1 68414.m06125 F-box family protein contains Pfam prof... 28 6.2
At1g33590.1 68414.m04158 disease resistance protein-related / LR... 28 8.3
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam... 28 8.3
>At5g61390.1 68418.m07702 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 487
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 76 VDKGSPPQWSP-VYTVKGLLNIPYAELHEP 162
VD GS W+P V +KG LN P A +H P
Sbjct: 383 VDSGSGSDWNPLVIPMKGFLNCPTARIHIP 412
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 294 TXTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGD-KL 470
T ++E V L I VL D +K I E +DA+TAK ++Q +G K
Sbjct: 165 TECNYSQERIKDVIGVNALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKS 224
Query: 471 NKYTMWVKYKKTL 509
Y+ +Y KTL
Sbjct: 225 GYYSAVRRYIKTL 237
>At5g07710.1 68418.m00884 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 468
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 VDKGSPPQWSPVYT-VKGLLNIPYAELH 156
VD GS +W+PV +KG +N P A +H
Sbjct: 365 VDSGSTSEWNPVVNPMKGFVNYPNARIH 392
>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 280
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 517 IPFNVFLYLTHIVYLFSLSPTGCTICHLAVSA-SCIVSVPIYLKS-VMSGSTDWMSWS 350
+ NV L HI++ SLS G + L V A C++ + LK V+S + W SW+
Sbjct: 187 LTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWA 244
>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 517 IPFNVFLYLTHIVYLFSLSPTGCTICHLAVSA-SCIVSVPIYLKS-VMSGSTDWMSWS 350
+ NV L HI++ SLS G + L V A C++ + LK V+S + W SW+
Sbjct: 188 LTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSSWA 245
>At2g26380.1 68415.m03166 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-2A
[Lycopersicon pimpinellifolium] gi|3894389|gb|AAC78594
Length = 480
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = -3
Query: 511 FNVFLYLTHIVYLFSLSPTGCTICH------LAVSASCIVSVPIYLKSVMSGSTDWMSWS 350
F+ F T +++L L+PT CH L S I P + S TD SW+
Sbjct: 6 FHNFFIFTAVIFLRCLNPTAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCSWN 65
>At1g53815.1 68414.m06125 F-box family protein contains Pfam profile
PF00646: F-box domain
Length = 237
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 404 HRNNAGCRHGQMADGTAGRR*AKQIHDVG*IQEDIKGDSVPIPVRYEMKGFN 559
H+N + ++ GR +Q + VG I I G+S +P + +KG N
Sbjct: 117 HQNTGNTKFYEICGPVCGRVLCRQYNSVGVIYNPITGESSNLP-KLSLKGIN 167
>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 477
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 511 FNVFLYLTHIVYLFSLSPTGCTICH 437
F +F++ T +++L L+PTG CH
Sbjct: 5 FTLFIF-TFVIFLQCLNPTGAATCH 28
>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 5 VGRRSNSCYSLRCCVFSWPSH 67
V R S S Y CCV W SH
Sbjct: 101 VTRSSRSVYCEHCCVVGWSSH 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,914
Number of Sequences: 28952
Number of extensions: 330045
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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