Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0386
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    32   0.55 
12_02_1233 + 27224219-27225607                                         29   5.1  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    28   6.7  
04_01_0288 + 3824337-3826385                                           28   6.7  
07_03_0861 + 22072041-22072789,22074065-22074164                       28   8.9  
05_03_0545 - 15244647-15245147,15245342-15245635                       28   8.9  
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180...    28   8.9  

>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 258 DREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVTMAINA*FANSLMNR 109
           DR   PG  P GF+  AG  SVF  +S+   FTS+   +    A  L  R
Sbjct: 506 DRHLRPGAAPGGFAIPAGSLSVFLFLSI-LLFTSLNERVLVPAARRLTRR 554


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 292 IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG-RYRMLK 435
           IDE+C  + + P  TYS Y    G L    +    +R+     RYR++K
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFR--GSLYVHCQNNCVIRITIANHRYRIIK 255


>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
 Frame = +1

Query: 277  TGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNV----RVVTVGRYRMLKDMV 444
            +G+R++ ++ ++  Y P Q + +YI     L PGA    +V    +V  V  Y  L ++ 
Sbjct: 1132 SGQRVLSQVVKVEVYKPLQIHPEYIY----LTPGASFVLSVKGGPKVGVVIEYTSL-NVE 1186

Query: 445  SHKILKTKSEISALTDFLDWLGKRKEMVVSFLYTTNPGGSVLQCFLRLDKVRPVGIVL 618
            + ++  +  ++SA T     +G      V+F   +N G  + + F R++   PV ++L
Sbjct: 1187 TVEVQNSTGKLSAKT-----VGNSTMRAVAF---SNEGTFICEAFGRVEVDIPVAMIL 1236


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 421 YRMLKDMVSHKILKTKSEISALTDFLDWL 507
           +++ K   SH   KT +++S L  F DWL
Sbjct: 395 HKITKATTSHHWFKTLNDLSTLVGFADWL 423


>07_03_0861 + 22072041-22072789,22074065-22074164
          Length = 282

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 271 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRH 393
           D   RR+I +IC I+ ++PKQ +S+ ++ + +    GAR+ +
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEY 266


>05_03_0545 - 15244647-15245147,15245342-15245635
          Length = 264

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -2

Query: 611 IPTGRTLSSLKKHCRTEPPGFVVYKNDTTISFLFPNQSRKSVKADISD 468
           +PTG+    L +  +TEPP F +  +        P +  ++   + S+
Sbjct: 67  VPTGQQQCKLSEFLKTEPPTFAIAVDPMEPGMFLPQEDERNADNNTSN 114


>03_01_0228 +
           1802038-1803265,1804207-1804245,1804638-1804783,
           1804891-1804958,1805045-1805147,1805287-1805400
          Length = 565

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 364 DLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALT 489
           +L P   R H++RVV +   R+  D    +I+ T  EISA T
Sbjct: 145 ELLPKLPRAHDLRVVLLESARLPGDSSDPRIVATIEEISATT 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,486
Number of Sequences: 37544
Number of extensions: 390375
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)