Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0386
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   3.9  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   3.9  
SB_7581| Best HMM Match : Pox_T4_N (HMM E-Value=2.1)                   29   5.2  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     28   6.9  

>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 67   HDECFKVILLL*NITISQHVCG 2
            HD+ FKV L+L +  ++QH CG
Sbjct: 1511 HDQLFKVFLVLLDFRVTQHQCG 1532


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 539 KNDTTISFLFPNQSRKSVKADISD 468
           K  TTI  +FP++ RK +KA+I D
Sbjct: 94  KYRTTIKVIFPDKQRKKMKANIQD 117


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 539 KNDTTISFLFPNQSRKSVKADISD 468
           K  TTI  +FP++ RK +KA+I D
Sbjct: 94  KYRTTIKVIFPDKQRKKMKANIQD 117


>SB_7581| Best HMM Match : Pox_T4_N (HMM E-Value=2.1)
          Length = 662

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 605 TGRTLSSLKKHCRTEPPGFVVYKNDTTISFLFPNQSRKS 489
           TG TLS+L  H   +   +   K  TT+S L  ++SRK+
Sbjct: 390 TGTTLSTLPTHKPRKANRYANMKTGTTLSTLLTHKSRKA 428



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 605 TGRTLSSLKKHCRTEPPGFVVYKNDTTISFLFPNQSRKS 489
           TG TLS+L  H   +   +   K  TT+S L  ++SRK+
Sbjct: 413 TGTTLSTLLTHKSRKANRYANMKTGTTLSTLLTHKSRKA 451


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 53   KTFVVHHTGLRGSYFVYQHLFINEFAN*ALMAMVTEVKV----NGSEMEANTEVPPALAE 220
            K F++H +  RG + V+Q++ IN      LMA +T  +     N S+ +  +EV   L +
Sbjct: 857  KEFILHASKRRGDFPVFQNVPINTKEGGVLMATITGSEALRIENQSDEDTRSEVMATLRQ 916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,761,822
Number of Sequences: 59808
Number of extensions: 457518
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)