Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0386
         (738 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071702-1|AAH71702.1|  476|Homo sapiens DBC1 protein protein.         31   3.3  
BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder canc...    31   3.3  
AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder canc...    31   3.3  
AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder canc...    31   3.3  
AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.              31   3.3  
M64347-1|AAA58470.1|  731|Homo sapiens fgflr protein.                  30   10.0 
M58051-1|AAA52450.1|  806|Homo sapiens fibroblast growth factor ...    30   10.0 
BC128610-1|AAI28611.1|  480|Homo sapiens FGFR3 protein protein.        30   10.0 
BC121175-1|AAI21176.1|  480|Homo sapiens FGFR3 protein protein.        30   10.0 
AY768549-1|AAU89726.1|  806|Homo sapiens fibroblast growth facto...    30   10.0 
AF487554-2|AAM22078.1|  769|Homo sapiens fibroblast growth facto...    30   10.0 
AF487554-1|AAM22079.1|  771|Homo sapiens fibroblast growth facto...    30   10.0 
AF245114-1|AAF63380.1|  694|Homo sapiens fibroblast growth facto...    30   10.0 

>BC071702-1|AAH71702.1|  476|Homo sapiens DBC1 protein protein.
          Length = 476

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 WSETSSQCTGCHRWTLQNAKRYG-FXXXXXXKIRDISFNRLP*LVRKEKGDGSVILIYHE 551
           W +   Q + C+ WTL    R+  F       +R  S  RLP L+R E G G V L    
Sbjct: 302 WEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLR--SRTRLPTLLRNETGQGPVDLSDPS 359

Query: 552 PRRF 563
            R+F
Sbjct: 360 KRQF 363


>BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 WSETSSQCTGCHRWTLQNAKRYG-FXXXXXXKIRDISFNRLP*LVRKEKGDGSVILIYHE 551
           W +   Q + C+ WTL    R+  F       +R  S  RLP L+R E G G V L    
Sbjct: 587 WEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLR--SRTRLPTLLRNETGQGPVDLSDPS 644

Query: 552 PRRF 563
            R+F
Sbjct: 645 KRQF 648


>AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 WSETSSQCTGCHRWTLQNAKRYG-FXXXXXXKIRDISFNRLP*LVRKEKGDGSVILIYHE 551
           W +   Q + C+ WTL    R+  F       +R  S  RLP L+R E G G V L    
Sbjct: 587 WEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLR--SRTRLPTLLRNETGQGPVDLSDPS 644

Query: 552 PRRF 563
            R+F
Sbjct: 645 KRQF 648


>AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 WSETSSQCTGCHRWTLQNAKRYG-FXXXXXXKIRDISFNRLP*LVRKEKGDGSVILIYHE 551
           W +   Q + C+ WTL    R+  F       +R  S  RLP L+R E G G V L    
Sbjct: 587 WEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLR--SRTRLPTLLRNETGQGPVDLSDPS 644

Query: 552 PRRF 563
            R+F
Sbjct: 645 KRQF 648


>AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.
          Length = 761

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 WSETSSQCTGCHRWTLQNAKRYG-FXXXXXXKIRDISFNRLP*LVRKEKGDGSVILIYHE 551
           W +   Q + C+ WTL    R+  F       +R  S  RLP L+R E G G V L    
Sbjct: 587 WEKIRLQNSQCYNWTLLLGNRWKTFFETVHIYLR--SRTRLPTLLRNETGQGPVDLSDPS 644

Query: 552 PRRF 563
            R+F
Sbjct: 645 KRQF 648


>M64347-1|AAA58470.1|  731|Homo sapiens fgflr protein.
          Length = 731

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 694 QYSPGGQDTPSSSSSGDDSVFAHDLLP 720


>M58051-1|AAA52450.1|  806|Homo sapiens fibroblast growth factor
           receptor protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 769 QYSPGGQDTPSSSSSGDDSVFAHDLLP 795


>BC128610-1|AAI28611.1|  480|Homo sapiens FGFR3 protein protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 443 QYSPGGQDTPSSSSSGDDSVFAHDLLP 469


>BC121175-1|AAI21176.1|  480|Homo sapiens FGFR3 protein protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 443 QYSPGGQDTPSSSSSGDDSVFAHDLLP 469


>AY768549-1|AAU89726.1|  806|Homo sapiens fibroblast growth factor
           receptor 3 (achondroplasia, thanatophoric dwarfism)
           protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 769 QYSPGGQDTPSSSSSGDDSVFAHDLLP 795


>AF487554-2|AAM22078.1|  769|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 732 QYSPGGQDTPSSSSSGDDSVFAHDLLP 758


>AF487554-1|AAM22079.1|  771|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 771

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 734 QYSPGGQDTPSSSSSGDDSVFAHDLLP 760


>AF245114-1|AAF63380.1|  694|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 694

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 EYFPGGRPTGFSASAGGTSVFASISLP 172
           +Y PGG+ T  S+S+G  SVFA   LP
Sbjct: 657 QYSPGGQDTPSSSSSGDDSVFAHDLLP 683


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,108,011
Number of Sequences: 237096
Number of extensions: 2148260
Number of successful extensions: 5775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5770
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)