Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0386
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05755.1 68415.m00619 integral membrane family protein contai...    29   3.2  

>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/95 (27%), Positives = 46/95 (48%)
 Frame = +1

Query: 223 ASRSPTRKVLSIGWXMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVR 402
           AS SP  ++      ++ T R L     + A+  P+ + S  I+P   LN   R R N+ 
Sbjct: 2   ASSSPETRIADEHLSLELTVRDLESTALESASSAPELS-SDEIIPL--LNQNQRPRINIF 58

Query: 403 VVTVGRYRMLKDMVSHKILKTKSEISALTDFLDWL 507
             +  R +  + ++  K+  T++EIS +T F  W+
Sbjct: 59  SASYTRRKPSEQVI--KV--TETEISPVTQFSSWI 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,044
Number of Sequences: 28952
Number of extensions: 320962
Number of successful extensions: 817
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)