Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0336
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   3.5  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   8.0  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   8.0  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   8.0  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 579 TYKTFIPTANNYIFIRRGRNQNKLLNPS 496
           TYK F+  + +YIF+      N L  PS
Sbjct: 97  TYKIFLDPSGHYIFVTTTAGDNCLFTPS 124


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 210 FFVAIEFKSTKITVKCLKTFGRFKTKIGRHGTISFIIKHRVFTGNVNTKKQDL 368
           F+V+   +   +T+  LKT G    +   H  +S + + + F G +N+  QD+
Sbjct: 188 FYVSYNAREISVTLPRLKTVGDMTIQRVAHLQLSNLEEVKGFLGFLNSTLQDI 240


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = -1

Query: 338 CKHPVLYYEGYRSVTSNFGFESSKCFKTFYRNFSRFKFYGNKELTDKMSIRRGMSRLTPV 159
           C H ++Y   +  V +     S         N     ++GN +L++ + + + +S   PV
Sbjct: 348 CNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVNQYLSEQRPV 407

Query: 158 PF 153
            F
Sbjct: 408 FF 409


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 583 KNLQNLHSNSQ*LYLHTPRP*PKQTFKSIGLYLP 482
           K + N H  S   ++H PRP P Q    I LY P
Sbjct: 27  KYIVNRHLRSNRYHIHVPRPNPNQI---INLYPP 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,306
Number of Sequences: 5004
Number of extensions: 62479
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)