Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0336
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_58887| Best HMM Match : RnaseH (HMM E-Value=0.023)                  28   8.6  
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)                 28   8.6  
SB_14434| Best HMM Match : RVT_1 (HMM E-Value=8e-34)                   28   8.6  

>SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 374 YVEVLFFGINIPCKHPVLYYEGYRSVTSNFGFESSKCFK 258
           Y+ +L+  I IPCKHP  Y   YR+V +   F    C K
Sbjct: 93  YLFILYVRIRIPCKHPFRY--EYRAVKN---FNGIACIK 126


>SB_58887| Best HMM Match : RnaseH (HMM E-Value=0.023)
          Length = 263

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 262 LRHFTVILVDLNSMATKN*LTKCQYV--AECPGSHPCLSCLKCKQA 131
           +  F+VI   LN +  +   TK Q+V  AEC G+  CL    C  A
Sbjct: 16  VERFSVIAEPLNELLREEAGTKRQFVWTAECQGAFECLIDRLCSSA 61


>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
          Length = 1073

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 2/144 (1%)
 Frame = -2

Query: 586  FKNLQNLHSNSQ*LYLHTPRP*PKQTFKSIGLYLPTSISQRLVTYLIDSRKTPFKTPNFN 407
            FK +   H+  Q +Y    R  P+ + KS     P S  Q        +R  P ++P   
Sbjct: 660  FKVIDEQHT--QLMYREVTRATPRSSVKSA--ICPPSYHQHFGD-ASPARSPPIESPVRY 714

Query: 406  LTSKNFHEAI--IT*RSCFLVLTFPVNTRCFIMKDIVP*RPILVLNLPNVLRHFTVILVD 233
            L       A+   T +  ++    P    CF  +  VP      ++LP V     +I VD
Sbjct: 715  LDHAEVSRALPSCTYKPSYVTRNCPPG--CFFSESFVPIYRYPSVDLPRVENEHKLIDVD 772

Query: 232  LNSMATKN*LTKCQYVAECPGSHP 161
            L+S   K  +TK  YV +   ++P
Sbjct: 773  LSSEEAKR-ITK-SYVQQLDAAYP 794


>SB_14434| Best HMM Match : RVT_1 (HMM E-Value=8e-34)
          Length = 335

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 262 LRHFTVILVDLNSMATKN*LTKCQYV--AECPGSHPCLSCLKCKQA 131
           +  F+VI   LN +  +   TK Q+V  AEC G+  CL    C  A
Sbjct: 253 VERFSVIAEPLNELLREEAGTKRQFVWTAECQGAFECLIDRLCSSA 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,534,856
Number of Sequences: 59808
Number of extensions: 435003
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)