Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0334
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.006
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.011
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.015
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.020
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.020
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.020
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.034
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.045
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.079
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.18
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 30 0.24
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 30 0.32
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.56
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 28 0.97
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 0.97
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.3
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.7
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 27 1.7
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 1.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 2.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 3.9
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 5.2
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.2
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 6.9
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 9.1
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G AFV F + D ++A++T++G+ LD RE+ VQ A
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 251 RGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
D +L+V NL+ T E+LR +F R G + +Y+ +D+ TG+ +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Score = 29.5 bits (63), Expect = 0.42
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 197 RFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDG 331
RF ++R YL + R ++GFAFV +++R A +A D +DG
Sbjct: 224 RFGGIQRV--YLAKDKETGR-AKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
GFAFV +R+ AEEA+++++G +DGR + V A
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 31.9 bits (69), Expect = 0.079
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
E+RG+ FV F DA+ A + + L GR LR+ A
Sbjct: 44 ENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
S+ V N+ Y TPE+L+ F CG V + I D++TG
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTG 93
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 227 YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
++H QR S+GF ++++ A AL+ M+G L GR +RV
Sbjct: 368 FVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 29.5 bits (63), Expect = 0.42
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
L V N+ + T ED++ +FE G++ +++ RD
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
Score = 28.7 bits (61), Expect = 0.74
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L R T +L FE+ G V D I RD+ +G+
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSSVVMLKK 311
V NL++ T +DL F CG++ I +P D +G+++ FS + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+V R S G+A+V F D E+ALD ++ ++ GR R+
Sbjct: 115 AVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+S+GF FV + +A +A+ M+ RML G+ L V +A
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.7 bits (76), Expect = 0.011
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 370
R SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 44 RTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S GF FV F ++ A A+ M+G +LDG +L ++++
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 31.9 bits (69), Expect = 0.079
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R +RGFAF F R+A A+ + L GR L +Q A
Sbjct: 758 RSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 28.7 bits (61), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 159 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
NLTY +DL+ +F G++ +++P D+ T
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKT 360
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
V NL++ TT E + +F +CGE+ I + DR+T
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFT 69
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
GF FV +FE +DA ++L + LD R +R +
Sbjct: 74 GFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.1 bits (72), Expect = 0.034
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 117 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
P R DG + + L + TT + LR FE+ GEV D + RD TG+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.045
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
V + SRGF F+ F +A A+D ++ + GR L VQ A
Sbjct: 137 VTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.079
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+GF F F DAE A+ +DG+ G +L Q A
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 30.7 bits (66), Expect = 0.18
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
D V L V NL ++ E L+ F+R G+V + IP D+ +G+
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGR 131
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 30.3 bits (65), Expect = 0.24
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 239 QRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
+ V +S G+AFV F RD + A G ML+GR + V +
Sbjct: 133 RNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDV 175
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
D ++ + L+Y T D+ R F R G + I + R++ TGK
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGK 139
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+ NL + +D+ VF GE DI + RD+ TGK
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGK 70
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+S+GFAF+++ ++R A+D M L R +RV
Sbjct: 70 KSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+GFA+++F + ++AL + +M +GR LR+ A
Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 0.97
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGR 349
+E G VRF +AE + M GR DGR
Sbjct: 294 KEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 0.97
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 367
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 162 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 55
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 284 FFERRDAEEALDTMDGRMLDGRELRV 361
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 558 NDCVSGNAPLELFESERSDCGXGCGYDC 475
N + PL+L + R DCG CGY+C
Sbjct: 48 NPSDTSKLPLDL-KLFRWDCGSNCGYEC 74
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
V N++ T E LR F+ GEV D+ + + YTG
Sbjct: 98 VSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTG 132
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 275 FVRFFERRDAEEALDTMDGRMLDGRELR 358
++ + + DA A+ +DG + DGR LR
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 497 PQSLRSDSKSSRGAFPLTQSFSLTIHXLKCPY 592
PQS R +++ R P+ +SFS H L PY
Sbjct: 116 PQSNRKPTEAYRRNSPVKKSFSRPSHSLLYPY 147
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL + TT DL+ F + G++ + + TGK
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGK 267
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 174 TTPEDLRRVFERCGEVGDIYIPRDRYTG 257
T EDL +F R G++ + RD+ TG
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETG 282
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 357 RSSLPSNIRPSIVXXXXXXXXXSKNLTKANPLLSLCTDLWEC 232
R+ +PSN P + K +TK N L D++EC
Sbjct: 39 RNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQSLLSLDIFEC 80
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 264 LLSLCTDLWECRYHQLLRTFRKRGVSLQAS 175
L+ C +W+C+ Q + F +RG+ + S
Sbjct: 228 LILACDGIWDCKSSQQVVEFVRRGIVARQS 257
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 258 SLCTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 112
+L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 202 ALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,303
Number of Sequences: 5004
Number of extensions: 42463
Number of successful extensions: 153
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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