Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0334
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 53 2e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 53 2e-07
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 9e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 46 2e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 46 3e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 3e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.003
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.003
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 38 0.004
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 38 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 38 0.004
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.006
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.007
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.007
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 38 0.007
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 37 0.010
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 37 0.010
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.013
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 37 0.013
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.013
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.013
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.013
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.017
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.017
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.022
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 36 0.022
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.022
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.022
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 36 0.030
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.030
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 35 0.039
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.039
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.039
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.039
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 35 0.039
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.039
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.039
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.052
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 34 0.068
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.068
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.068
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.068
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.090
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.090
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.090
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 33 0.12
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.12
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.12
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.12
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.16
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.16
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.16
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.16
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.16
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.16
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.21
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 33 0.21
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.21
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.21
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.21
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.21
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 32 0.28
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.28
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.28
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.28
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.36
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.36
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.36
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.48
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.48
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.48
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 31 0.48
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.48
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.48
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.48
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.48
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.48
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 31 0.48
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.64
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.64
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.64
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 0.64
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 0.64
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.64
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.64
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.64
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.84
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 31 0.84
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.1
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.1
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.5
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.5
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 1.5
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 1.9
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 1.9
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 1.9
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 1.9
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 1.9
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 1.9
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 1.9
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 1.9
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 29 1.9
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.9
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.6
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 2.6
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 2.6
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.6
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 2.6
At1g30680.1 68414.m03751 toprim domain-containing protein contai... 29 2.6
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.4
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 29 3.4
At2g40800.1 68415.m05033 expressed protein 29 3.4
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 3.4
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 3.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 4.5
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 4.5
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 4.5
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 28 4.5
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 4.5
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 4.5
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 28 5.9
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 28 5.9
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 5.9
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 5.9
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.9
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 28 5.9
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 5.9
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 5.9
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 5.9
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 5.9
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 28 5.9
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 28 5.9
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 7.8
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR TG
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR TG
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
SL V NL + EDLRR FE+ G V DIY+PRD YTG
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ RGF F++F + DA EA MDG +L GREL V A
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
SL V NL + EDLR+ FE+ G V DIY+PRD YTG
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SL V N+ PE+LR FER G V D+YIPRD Y+G+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 86 QPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 135 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
G L + NL P DLR FER G + DIY+PR+ YTG+
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
E RGF FV++ DA EA+ M+ +++ GRE+ + A
Sbjct: 86 EPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R+SRG AFV + R DA +A +MD ++L+GR+L V +A
Sbjct: 95 RQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F E DA A D MDG+ L GR LR+ A
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 50 NQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V NLT+RTT +DLRR FE+ G+V D + + Y G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ S+G+AF++F + DA A++TMD RM +GR + + +A
Sbjct: 78 KRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIA 116
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF F+ F E++ +EA+ M+G LDGR + V A
Sbjct: 47 SRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F ++DA+ A++ M+G+ L R++R A
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +2
Query: 194 PRFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
P +++ S + S + + ++ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRG+ FV + + + E AL+++DG L+GR +RV +A
Sbjct: 217 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SRGFAFV D +D +DG GR L+V A
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL++ T E L F CG+V + D TG+
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 216
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+GF F+ F DA +AL ++DG+++DGR + V++A
Sbjct: 48 KGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
SRGF FV + +AE A+ MDG+ L+GR + V++
Sbjct: 43 SRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
SRGF FV + E A +G LDGR LRV
Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F ++DA+ A+D + G+ L R++R A
Sbjct: 179 SRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ S + + +E + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 80 VESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV + + EA+ +DG+ L+GR +RV +A
Sbjct: 284 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SRGF FV +AE A++ + L+GR L V A
Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ S + + ++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ S + + ++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
SRGF FV +A+EA+ + + GR ++V
Sbjct: 156 SRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ FV F RDAE+A+ DG LDG LRV++A
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 253 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 123 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
P+ + +L V L+ RTT E LR F + GEV D + DR +G
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDG 346
S+GF FVR+ D+ + + MDG+ LDG
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDGKFLDG 124
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ TG+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F A A+ +DGR L GR ++V A
Sbjct: 80 SRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + + Y + LR F + GEV D + DR TG+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGR 79
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
R+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 115 RQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
SRGF FV + E A +G +GR LRV
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 CDAVVLY*SEF-NNIVLLNSFDLS*ISILFKMSYGRPPPRIDGMVSLK--VDNLTYRTTP 182
C + Y S F N+ + + F++ + P R LK V NL++
Sbjct: 53 CSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDS 112
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTGK 260
L ++FE G V + + D+ TG+
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGR 138
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
SRGF FV + E A +G +GR LRV
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 CDAVVLY*SEF-NNIVLLNSFDLS*ISILFKMSYGRPPPRIDGMVSLK--VDNLTYRTTP 182
C + Y S F N+ + + F++ + P R LK V NL++
Sbjct: 53 CSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDS 112
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTGK 260
L ++FE G V + + D+ TG+
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGR 138
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 99 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
K S G P +DG + + NL + TT D+R++F C + + + +++ TG+
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGFAFV F +A A+ +DG+ L GR +RV A
Sbjct: 74 SRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V ++Y T LR F + GEV D I DR TG+
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGR 73
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 236 SQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S R R SRGF FV+ + A+ +DG+ L+GR ++V +A
Sbjct: 240 SDRETGR-SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SRGF FV +AE+A++ + ++GR L V A
Sbjct: 152 QSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
R P D + V NL + L R+F G+V D + DR TG+
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGR 246
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 214 SRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
S+ F FV + + A+ A+D M+GR L G++L+VQ+
Sbjct: 389 SKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
E RGFAFV+F + D A++ +G + GR + V+ A
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
L + NL ++ P D++ VF G V D++IP++ TG
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
V +GFAF+R+ +A +A+ M G+ LDGR + V+ A
Sbjct: 113 VANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 87 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
S L S PP G L V L++RTT + LR FE+ G + + + D+ +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.090
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 108 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 186 DLRRVFERCGEVGDIYIPRDRYTGK 260
D R FER GE+ D+Y+P+D Y K
Sbjct: 106 DFRSHFERYGEITDLYMPKD-YNSK 129
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 216 KSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
SR F F DA ++ ++G ++GRE++V +
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 33.9 bits (74), Expect = 0.090
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +2
Query: 275 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
FV FF+ RDA +AL M+G+++ G+ + +Q +
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+GF F+ F DA++AL ++G++++GR + V+ A
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR FE+ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR FE+ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 139
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 RSVHR--ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
R++H ++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 238 RALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 239 QRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+R++H S+ ++ FF+ R A+ AL ++G + GR+L++
Sbjct: 325 RRTMHENSQ--VYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 123 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
P G L V NL + +DLR+VFE G V + +PRD
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRG+ FV F A A+ M+G+ L+G + V +A
Sbjct: 71 SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
V S+GF FV F +A++AL +G+ L+GR + V A
Sbjct: 70 VSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
+G+AF+ + RD + A DG+ +DGR + V +
Sbjct: 179 KGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 352
+S+GF FV F DA A+D ++G+ D +E
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRG FV F +A A+ M+G+M+ + L V +A
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
RESRGF F+ DA + ++D +L GR + V+ A
Sbjct: 113 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
+Y PP ++ V NL T E+L++ F + GEV + IP + G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 370
SRGFAFV F+ DA +AL+ + L+ G+ LRV A
Sbjct: 498 SRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYA 536
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTG 257
++LR F +CGEV +++P DR TG
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 367
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGR 349
+GFA+V F + +AE+AL ++ +++DGR
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR F++ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 163
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R +AFV F DA A++++ G L G LR++ A
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.5 bits (68), Expect = 0.48
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 275 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
FV F++ RDA A D M+G+ + G+++ ++ +
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+S+GF FV F +A +A+ T G+M G+ L V +A
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+R RG+AFV F DA A +T++G + L V A
Sbjct: 237 NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV + +A AL M+G+M+ + L + +A
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 358
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 358
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
RESRGF F+ DA + ++D +L GR + V+
Sbjct: 83 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGR 349
R SRGFAFV +DAE + ++ +L+GR
Sbjct: 110 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDGR 349
R SRGFAFV +DAE + ++ +L+GR
Sbjct: 109 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+S+GF FV F DA A+++++G D +E V A
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
R + S+G FV F +A EA+ + G+M++ + L V +A
Sbjct: 165 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.64
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V + + T DL VF + GE+ D+ + RD+ TGK
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G FV F +A L+ M+G+M+ G+ L V +A
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDI 230
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.84
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 96 FKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
F+M G + + V L + T + +RR FE+ GE+ + + D+ TG+
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
++RGFAFV +A+ A+D D + GR + V A
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV + +A A+ M+G+M+ + L V +A
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 153 SRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 139 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 258
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+SR F FV F + A A++ M+G ++D +EL V A
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
S+G FV F +A +A+ M+G+M+ + + V +A
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 364
ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 147 ESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 364
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 364
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 364
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVE 70
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDG 331
++ R +R+SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 141 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L V ++ T E++R FE+ G V ++ + +D+ TG+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQ 159
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDG 331
++ R +R+SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 141 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L V ++ T E++R FE+ G V ++ + +D+ TG+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQ 159
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 343
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMD 328
S+H ++ G+AFV F + RDAE+A+ D
Sbjct: 4 SLHIDA-GYAFVYFEDERDAEDAIRRTD 30
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 343
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSSVVMLKK 311
V +L + EDL++VF GEV ++ I ++ T K + S F++V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDG 346
S+GF FV + DAE+A M+ + LDG
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
SRGF FV + A A+ M + LDGR + V A
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGR 334
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDGK 61
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+ + S+G+AF+ + A AL M+G++++G + V +A
Sbjct: 318 ISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 186 DLRRVFERCGEVGDIYIPRDR 248
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 105 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR +G V+
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136
>At1g30680.1 68414.m03751 toprim domain-containing protein contains
Pfam profile: PF01751 toprim domain
Length = 709
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 213 GEVGDIYIPRDRYTGKVEDSP 275
G++GD Y+ DR TG DSP
Sbjct: 675 GQIGDAYLCYDRTTGSYSDSP 695
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRM 337
R+S G+ +V F + DA+ A++ M+G++
Sbjct: 96 RQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V +++ T + LR F GEV + RD+ TG+
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGR 45
>At2g40800.1 68415.m05033 expressed protein
Length = 377
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 355 KLPAVQHSSVHRVQGFFSITTLEKPYEGESSTFPVYR 245
+L + + S +V G F+ ++KP + SSTF YR
Sbjct: 98 RLVSTKSSGFRKVDGSFARKVVDKPVKAVSSTFARYR 134
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGR 334
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDSRDARDAIREVDGK 61
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T E LR+ FE+ GE+ + + D+ TG+
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 129 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+D + V L TT + + F + GE+ D I +DR TG+
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQ 81
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E L VFE GE+ + + D+ TGK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E L VFE GE+ + + D+ TGK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T+ + LR F GEV + I +DR TG+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T+ + LR F GEV + I +DR TG+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL + + LR++FE G V + +P D TG+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQ 304
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 189 LRRVFERCGEVGDIYIPRD 245
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 358
S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDG 331
R +R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEYRQSRGCGFVKYSSKETAMAAIDGLNG 31
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 370
+S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 155 DSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 239
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMD 328
G+AFV F + RDAE+A+ +D
Sbjct: 36 GYAFVYFEDERDAEDAIRKLD 56
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 358
+ +G+AFV F + A EA+DT++ G+ ++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E+L+ FE GE+ + + D+ TG+ +
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAK 204
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 111 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDS 272
G PP + G+VSLK +L+ ++ + F G + I + R+ G++ ++
Sbjct: 279 GHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEA 332
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T E LRR F++ G++ + + D+ TG+
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGR 63
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 251 HR-ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 355
HR E G FV F +A++AL M+G L RE+
Sbjct: 524 HRGEHVGCGFVEFASVNEAQKALQKMNGENLRSREI 559
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,386
Number of Sequences: 28952
Number of extensions: 234500
Number of successful extensions: 798
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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