Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0332
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    28   1.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   4.1  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.4  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    26   7.1  

>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +1

Query: 37  EKILEVTQILYSNIQKLLPTQESRDLAEAIHSXVQKKLRXQKXXDEKELRVVYQKLITAV 216
           EKI+ +   L  +++    T+E  D+   + S +Q++L      ++  +R +Y+K +  +
Sbjct: 5   EKIVRLRHNLLCHVRIHFKTKEDLDIRAFLFS-LQRELHAVAFLNQGSIRTLYEKRVVDI 63

Query: 217 TS 222
           TS
Sbjct: 64  TS 65


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 452 LXEVPSKLRAVVVN-GQHIFRSTVATHLSQG 541
           L  +P  L++V V  G +IFR++  TH+ +G
Sbjct: 304 LITIPQALKSVTVTEGNYIFRASKYTHMEEG 334


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 110 SLLSCVGNSFWILLYSIWVTSRIFSGTTRV 21
           S L+CV   +W L  +IW + ++ SG+ RV
Sbjct: 55  SNLTCVNIGYWQLFLNIWKSDKL-SGSFRV 83


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 43  ILEVTQILYSNIQKLLPTQESRDLAEAIHSXVQK 144
           I+E+T +++S+  KL   +ESRD    + S +++
Sbjct: 31  IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 252 VQLXPQELDERCDSCDQLLIDHTQLLLIXXFLVTE 148
           + +  + +DER D C + L+ H Q       ++TE
Sbjct: 66  ILILKKRMDERVDHCFETLVQHLQQTYPDICIITE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,768
Number of Sequences: 5004
Number of extensions: 40152
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)