Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0332
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543...    29   5.6  

>06_01_0735 +
           5431900-5432044,5432137-5432271,5432710-5432750,
           5433463-5433579,5433779-5433898,5433982-5434076,
           5434149-5434242,5434592-5434723,5435191-5435303,
           5435443-5435566,5435884-5436000,5436083-5436177,
           5436269-5436362,5436655-5436780,5436854-5436966,
           5437067-5437256,5437395-5437508,5437551-5437598
          Length = 670

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 452 LXEVPSKLRAVVVNGQHIFRSTVATHLSQGTVATYWRTXTSXENFTLLIQLPKRXN 619
           L  + S +  + V G   F   + +HL  GT+    R  T   ++   ++L +R N
Sbjct: 400 LVNIGSGVSMIEVTGNGKFERIIGSHLGGGTILGLARLLTGCSSYDEFLELSQRGN 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,870,123
Number of Sequences: 37544
Number of extensions: 280590
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)