Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0332
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         29   4.3  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        29   4.3  

>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 787 TMGQXRILELCLTEKRNTSFFR 722
           T G  + LE+C TEK+NT F++
Sbjct: 327 TAGSFKDLEVCATEKKNTEFYQ 348


>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 511 FDGRHSPFXGNCRYVLA 561
           FDGRH  F G C Y LA
Sbjct: 227 FDGRHIDFIGKCSYTLA 243


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 59  RYCTAISRNCCQRKKAEI-WPKRSTPTFRR-NSVTRNXMMRRSCV 187
           RY T + +N   R+  +  WP  S P FRR NS+ +N   R  C+
Sbjct: 719 RYFTNLKKNLPSRRPLDTYWPSAS-PLFRRTNSILKNMYHRWRCM 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,412,177
Number of Sequences: 59808
Number of extensions: 313373
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)