Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0332
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    29   3.6  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    28   6.2  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    28   6.2  

>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +1

Query: 31  VPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSXVQKKLRXQKXXDEKELRVVYQKL 204
           + EK+ E TQ+L S + K L  +E R +AE      ++++  +    ++EL ++ ++L
Sbjct: 449 IKEKVNERTQLLKSELDKKL--EECRRMAEEFVEMERRRMEERIVQQQEELEMMRRRL 504


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 94  TQESRDLAEAIHSXVQKK---LRXQKXXDEKELRVVYQKLITAVTSLV 228
           TQ SRDLAEA     Q+K   +R Q   D K   +  ++L T +T+LV
Sbjct: 307 TQTSRDLAEAKLEIKQQKEELIRTQSELDSKNSAI--EELNTRITTLV 352


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 502 HLPFDGRHSPFXGNCRYVLAHXHVXR 579
           H+ +D R   F G  RY  AH H+ R
Sbjct: 305 HVEYDQRPDMFRGTVRYASAHAHLGR 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,905
Number of Sequences: 28952
Number of extensions: 221038
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)