Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0331
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    30   2.8  
02_01_0333 + 2370032-2371075                                           30   2.8  
05_04_0415 - 21080600-21080941,21081119-21081217,21085363-210854...    29   6.5  
11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908     28   8.6  
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    28   8.6  
05_04_0409 - 21050479-21050637,21050732-21050872,21051170-210515...    28   8.6  
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...    28   8.6  

>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 150 ESGLGVWPYSPGGSKHFIRQFPGSALCQAT 239
           + GLG W   PG ++  IR  P SA+ +A+
Sbjct: 141 QQGLGRWSKEPGAAEESIRDLPPSAIGEAS 170


>02_01_0333 + 2370032-2371075
          Length = 347

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -2

Query: 220 LPGNWRIKCLLPPGEYGHTPSPDSVCATTLHDDGGDAA----GLEYALTEPT 77
           LPG  +++ LL  G +    + D  C T L+D G  A      L Y L  PT
Sbjct: 68  LPGKQQMEFLLLGGNHNMVVAADQTCRTVLYDPGEHAVRTLPALPYQLELPT 119


>05_04_0415 -
           21080600-21080941,21081119-21081217,21085363-21085455,
           21085802-21085855,21085943-21086044,21086449-21086523,
           21086662-21086784
          Length = 295

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 683 LXTQTEQSHHVPKTIVSG--DFXSIX*EKSKEIQPVVKSDDNNVSCDKILRSI 531
           + T  E++  +PK+   G  D+ S   E  +E +   ++++    CDKILR +
Sbjct: 229 IMTFMEEAQKIPKSFGDGYIDYRSDEEEMQEEEEGPEENEEEEDECDKILREV 281


>11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908
          Length = 290

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 208 WRIKCLLPPGEYGHTPSPDSVCATTLHDDGGD 113
           WR + L PP E+       +  ATT+  DGGD
Sbjct: 37  WRQRQLKPPPEWTVHADDAAAAATTVDGDGGD 68


>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 289 SVHGSAGCNSLNEVLRLV-AWHKALPGNWRIKCLLPPGEYGHTPSPDSVCATTLHDDGGD 113
           S+  +AG +     L ++ A+H+A     R  C++P   +G  P+  ++C   +   G D
Sbjct: 624 SLQPNAGASGEYAGLMVIRAYHRARGDYHRDVCIIPVSAHGTNPASAAMCGMKIVAVGTD 683

Query: 112 AAG 104
           + G
Sbjct: 684 SKG 686


>05_04_0409 -
           21050479-21050637,21050732-21050872,21051170-21051541,
           21051699-21051701
          Length = 224

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 568 TTTFLVTRYSGPYRSASPDPTRSH 497
           TTT L      P R+A+PDP R H
Sbjct: 161 TTTLLRLETEAPIRAAAPDPWRHH 184


>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 289 SVHGSAGCNSLNEVLRLV-AWHKALPGNWRIKCLLPPGEYGHTPSPDSVCATTLHDDGGD 113
           S+  +AG +     L ++ A+H+A     R  C++P   +G  P+  ++C   +   G D
Sbjct: 626 SLQPNAGASGEYAGLMVIRAYHRARGDYHRDVCIIPVSAHGTNPASAAMCGMKIVAVGTD 685

Query: 112 AAG 104
           + G
Sbjct: 686 SKG 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,830,014
Number of Sequences: 37544
Number of extensions: 559828
Number of successful extensions: 1440
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)