Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0331
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    30   2.4  
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr...    29   5.4  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    28   7.2  
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr...    28   9.5  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   9.5  

>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 470 RD*YWKTRLRRRLTSCRQGVQRHMYIGVDACLIHAVRFH*TSIKNVCLV 324
           R+ +WK   RR L    Q  ++H+Y+  D   +  +R   TS+ N  LV
Sbjct: 110 RERFWKKNNRRYLADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLV 158


>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 470 RD*YWKTRLRRRLTSCRQGVQRHMYIGVDACLIHAVRFH*TSIKNVCLV 324
           R+ +WK   R+ L    Q  ++H+Y+  D   +  +R   TS+ N  LV
Sbjct: 110 RERFWKKNNRKYLADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLV 158


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 280 GSAGCNSLNEVLRLVAWHKALPGNWRIKCLLPPGEYGHTPSPDSVCATTLHDDGGDAAG 104
           G+AG  +   V+R  A+H +   + R  C++P   +G  P+  ++C   +   G DA G
Sbjct: 638 GAAGEYAGLMVIR--AYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKG 694


>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 872

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 693 SGVPLHPNGAESPCPXDHCFRGLXEYP 613
           +G+ L+  G ++ CP D C R + ++P
Sbjct: 480 NGLKLNTQGNQNLCPGDECKRSIPKFP 506


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 280 GSAGCNSLNEVLRLVAWHKALPGNWRIKCLLPPGEYGHTPSPDSVCATTLHDDGGDAAG 104
           G+AG  +   V+R  A+H +   + R  C++P   +G  P+  ++C   +   G DA G
Sbjct: 644 GAAGEYAGLMVIR--AYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKG 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,251
Number of Sequences: 28952
Number of extensions: 406807
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)