Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0330
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   7.1  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    25   7.1  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   9.4  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 193 KHIENFINS-ALFKSFHHIFITFTMSLHIYPIS 98
           +H E  +++ A  KS HH + TFT++    PIS
Sbjct: 238 QHTEGIVHADAPIKSVHHFYGTFTLNNQKRPIS 270


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 523 HHWYXLISWNFKLFRT 476
           HHWY L+S N +L+++
Sbjct: 329 HHWYKLVSSNEELWKS 344


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 327 LVRWTTHYSIXPTV 286
           L++W  HYSI PT+
Sbjct: 40  LLKWLIHYSIGPTI 53


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/43 (18%), Positives = 21/43 (48%)
 Frame = -3

Query: 208 QGFIWKHIENFINSALFKSFHHIFITFTMSLHIYPISQM*HVA 80
           + + W  +   +   ++  FH+ +I     LH+Y ++   ++A
Sbjct: 132 EDYRWVRVRQIMPKWIYPLFHYFYIHIFQVLHLYLLASPTYIA 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,238
Number of Sequences: 5004
Number of extensions: 40229
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)