Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0330
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 PALPHAGRMPHYSACP 267
           P L  A   P+Y+ACP
Sbjct: 199 PILVRARETPNYTACP 214


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 234 VRQGREEWTRVLYGNTLRILLTV 166
           V  G   W R+ YG T  I LT+
Sbjct: 54  VCNGLWRWIRLTYGQTNHISLTL 76


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 234 VRQGREEWTRVLYGNTLRILLTV 166
           V  G   W R+ YG T  I LT+
Sbjct: 92  VCNGLWRWIRLTYGQTNHISLTL 114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 476  SPKQFKIPGN*XIPMMLMRVGKGRLKS 556
            SP+Q  +PG   +   +  V  G++KS
Sbjct: 1009 SPQQHVLPGKTLLASQIKLVSPGQIKS 1035


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,221
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)