Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0324
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    50   3e-07
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    28   1.4  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   4.4  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +3

Query: 567 GTXPXVTSSNCSIGGVLTGLGLPPNVIGNVLGRRXGVHDALGDGXXPT 710
           GT P VTSSN ++GGV TGLG+PP  I N +G        +G G  PT
Sbjct: 242 GTYPFVTSSNTTVGGVCTGLGVPPQRIANSIGVVKAYTTRVGAGPFPT 289


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KVIRVR*RNXXGRKYCKHYKIIKSI 397
           K IR R     GRKY  HY+IIK +
Sbjct: 117 KKIRKRFDRFSGRKYINHYEIIKEL 141


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 510 TPTWXSVVTNKIIAVXKSWRHRLH 439
           +P   SV T++ I V KSW  RLH
Sbjct: 245 SPCSTSVATSEPILVSKSWEDRLH 268


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 165 GG*AHSPPDVQWLLEPIDIYN 103
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,774
Number of Sequences: 5004
Number of extensions: 43327
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)