Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0324
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526,396...    47   2e-05
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379...    47   2e-05
02_05_0100 - 25821606-25822349                                         32   0.50 
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726...    30   2.0  
12_01_0304 - 2299676-2299938,2300493-2300841                           29   3.5  

>03_01_0529 -
           3968813-3968983,3969060-3969116,3969215-3969526,
           3969606-3970298,3971473-3971763
          Length = 507

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +3

Query: 567 GTXPXVTSSNCSIGGVLTGLGLPPNVIGNVLGRRXGVHDALGDGXXPT 710
           GT P VTSS+ S GG+ TGLG+ P  IG+++G        +G G  PT
Sbjct: 296 GTYPFVTSSSPSAGGICTGLGIAPRCIGDLIGVVKAYTTRVGSGPFPT 343


>03_05_0804 +
           27835508-27835805,27836372-27836421,27837306-27837998,
           27838077-27838388,27838528-27838698
          Length = 507

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +3

Query: 567 GTXPXVTSSNCSIGGVLTGLGLPPNVIGNVLGRRXGVHDALGDGXXPT 710
           GT P VTSS+ S GG+ TGLG+ P  IG+++G        +G G  PT
Sbjct: 315 GTYPFVTSSSPSAGGICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPT 362



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +1

Query: 643 SSGTFWGVVXAYTTRXATXPXPRXLHXETXSATPRXEGPXSGVXT 777
           S G   GVV AYTTR  + P P  L  +T     R  G   G  T
Sbjct: 340 SIGDLIGVVKAYTTRVGSGPFPTELLGKTGDLL-RASGMEFGTTT 383


>02_05_0100 - 25821606-25822349
          Length = 247

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = -2

Query: 836 GGLPDRRPGSSQAAAPDAXWVXTPDXGPSXLGVADXVSXCSXRGXGSVA 690
           G  P RRPG+S AAAP+      P  G      AD       RG GS A
Sbjct: 158 GRFPSRRPGASGAAAPET--AGEPGHGQGVAPGADVGGVVGVRGDGSDA 204


>02_04_0236 -
           21170753-21170794,21171089-21172220,21172332-21172601,
           21173043-21173305,21173406-21173492,21174149-21174326,
           21174784-21174984,21175769-21176025
          Length = 809

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 144 PDVQWLLEPIDIYNVNAPPTL---RCKF*GLSIVTTAFIFSSFNYF 16
           P+V+  L  +D Y++ AP TL     KF  L++  T FI   + Y+
Sbjct: 189 PEVKAYLNGVDAYSILAPSTLFVKLIKFENLTVDMTVFIIDCWKYY 234


>12_01_0304 - 2299676-2299938,2300493-2300841
          Length = 203

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 555 LFISGTXPXVTSSNCSIGGVLTGLGLP-PNVIGNVLGRRXGVHDALGDG 698
           L+I+      +  +   G    G GLP PN+ G + GRR  +HD  G G
Sbjct: 37  LWIAAATAHPSEGSRGSGPHAAGSGLPGPNLAGKLQGRRPRLHDNGGGG 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,025
Number of Sequences: 37544
Number of extensions: 295889
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)