Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0324
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57610.1 68416.m06418 adenylosuccinate synthetase (ADSS) iden...    49   3e-06
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ...    28   8.9  

>At3g57610.1 68416.m06418 adenylosuccinate synthetase (ADSS)
           identical to adenylosuccinate synthetase, chloroplast
           precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS)
           (AMPSase) (Swiss-Prot:Q96529) [Arabidopsis thaliana]
          Length = 490

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +3

Query: 567 GTXPXVTSSNCSIGGVLTGLGLPPNVIGNVLGRRXGVHDALGDGXXPT 710
           GT P VTSS+ S GG+ TGLG+ P+V+G+++G        +G G  PT
Sbjct: 298 GTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPT 345


>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 917

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 619 VNTPPMLQFDDVTXGXVPEINKKI 548
           +N PP L+FD    G V E+ K++
Sbjct: 390 LNNPPSLEFDQSRGGDVEEVEKEV 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,033
Number of Sequences: 28952
Number of extensions: 231743
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)