Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0322
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    27   4.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   4.4  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    27   4.4  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   7.7  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 244 VFDTTVVSLCGALQPRGLSLSEQYLGRCLLENGNLVPGIN---GLPRS 110
           VF+TT+  L G L    LS  + YL R +     L+   N   GLPRS
Sbjct: 128 VFETTIRILGGLLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLPRS 175


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 234 PLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCPVV*ITHVPK 88
           P+S+P      +   PSL +   G    T ++SP     PV+  T  PK
Sbjct: 320 PISAPKKQEFGVSLPPSLASPEKGGISSTTSVSPAAQASPVLSTTTQPK 368


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 240 STPLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCP 115
           STP+++ +    S  + P L  T A A+     ++PE +  P
Sbjct: 205 STPVNASTDTRKSTASTPQLQQTQAQANAPQQRINPETSSVP 246


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 544 WMRHHDEDGSTENFMDRRATYSPEGNPV 627
           W+  H ED S E F D+R       +P+
Sbjct: 609 WLEIHGEDASKEEFEDQRQKLDAVVHPI 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,556
Number of Sequences: 5004
Number of extensions: 61480
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)